Chr:
Chr12
Start:
8786145
End:
8788708
Strand:
-
Ref_name:
LOC9272000
Sequence
(XR_001541996.2):
GCCUCUCCCAGACGCGUCGCCACUCUUCACCCACCAUUCCAGUGCCAAUCCAUCCGAGGGAGAGCAUCCUCGCUGCUCUUCUCCACUGGUUCUCCAUCGCCGGCCGUGAAGAAGACGAUGGCCGCAAUCGUUGAUGAGCCGCGGUCGUUUCCCCUUCUCUUGCGUUCCAUACUCUCCUCACCAUGCCGAAUAUUUCUCCUUUUGAUUUCAUCCUCUCUGGUGCAGCCAAUCGACGGGAACGCUGCCGUGCACACCGGAGCUCUGGAGCGCGCUCAGCGCACCGCCGCAGCGACAUCGUCGCCGUUGCCAUCAAUCUAGAUCAAGCCGGAGCGAGCCACCACGCCACCAGCUUCACCUCAACCUCCUCUCCAUUUACCCUCAAGAAACCCAUCCAAUGGCGCAGCGAUCUUGGAGGUCGACAUCGUCUUUUCCAACUCCGUUCAACCGCUUCCAUCAUCGAUUCCAUUCUCUCUGAUCGAGCAGCGGACGUCAUCCCUGGAGUUGUGCCAUGCCGCCAUGGAGCUUCGCCGUCGCUGUGACUCUACAGACAUCCCCAGCCUUGUCUAGCAUCUCGAUGAUUGCUUAAACGGUGAAGAAGUGAUUUAGGUGCUGACAUUUUCCUGAUUCAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
48.58%
ME_num:
MEP:
36.18%
HE_num:
HEP:
15.04%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.97
Avg Expression:
223.15
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -7.507297062179 | 3.97008888560015e-16 |
| 2 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | -3.12056751551984 | 0.00485754954275698 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -6.58917535733634 | 1.15909070613907e-10 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -7.76320171303586 | 5.52931086920989e-17 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -8.23180264533346 | 2.65639222209409e-10 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -8.48445989007005 | 1.96393522315663e-11 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -8.65169736381303 | 6.90943685129472e-12 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -7.12957775411588 | 2.05757736123059e-21 |
| 9 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 2.19738911822528 | 0.00455801707990533 |
| 10 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | -4.8276306790397 | 0.0292002339636026 |
| 11 | Vialone_Nano // root // control--/--Vialone_Nano // root // 100 mM NaCl | 2.50459522301094 | 0.000298966012816544 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -8.2415376247565 | 1.11922279979713e-14 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -8.63351842877065 | 7.82135018132965e-15 |
| 14 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | 5.31671510241562 | 0.00602515405924338 |
| 15 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_RS105 | 5.49394941741004 | 0.00124284650928119 |
| 16 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | 6.17114980843038 | 3.82343547249115e-07 |
| 17 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | 6.1710646181639 | 3.8892797246793e-07 |
| 18 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | 6.1709591813208 | 3.83947319799461e-07 |
| 19 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 9.76784496052213 | 6.28138153751364e-14 |
| 20 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 5.73387385912793 | 2.58537591106931e-17 |
| 21 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -6.74435652023585 | 6.63396007856049e-19 |
| 22 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 7.38598703642752 | 8.54595823236588e-20 |
| 23 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -8.77525285317519 | 2.26971715948153e-15 |