Chr:
Chr4
Start:
11348450
End:
11351285
Strand:
+
Ref_name:
LOC9271938
Sequence
(XR_001545118.2):
GUGAAACCCUCUAUUUUCCCCACAUCAUCCGAGCUCUACGAGCUCUCUCUUCUCUCUCCACCAUGACCGGCCACCACUAAGUCCCGGCCGAUCUCCUCCCCUACAGCUCCACUUCUCGAAUCCUUGCACCACUAGUCUCUCUUCACUCCGGCGAAUCCAUUUUGUCCAUUUCCCCCUUCUCUCUCCCUCCAAACUAAGCCACCACCAUUACCACCUUAGCCGGCCGAAGGUGAGCUCGUGUUGCCGCUGUUCCGGCUAACUCACCCUUCCUCUCUCCCAGCCACCACCCUCCCCGGGUGCGCGUUGCUCGGGAACACGUUCCGCCACCGACGUCGCCGUCCCCCAUCCACUGGAGCACCGGCGUCCCUCUCUCCCUCUCCUCUCGUUUACUCGGCUGAAAAAGAAGAAGGAAGAUACGGGAGGAAGAAGAAGAGAAAGAAAAAGAAAAGAAAACAAACACUGACAGUAGAGUCUAUUAUCUUUUGGAUGGCAACCUGUGGUAUUUCGAGGAUCGGAUAAUCAGGUUGCUUAUCUUGAAUUUAUUUGCGUUGGAGCAAGGCAAGUUAUUAUCUCUCUCCUUUGAGCAUAAUUAUCCUUUAUUCUAUAUCUCCAUUAUCUCAUGCAUUAGUCAUUCAUGAUUUCGAAUGCGUAACCUGAACAUAGCAAACCAGAUAUGCUAGCUUUGCUUAGCCCUGCCUAAUUAGACUGCAUAAAAUAUAAUGAACUUAGAUUGGAACAAUAUGGUAGAAAUGGUUGAUUUCCAGGUGGCUAGUACUGUUCCAACCGACAUAAAACUGCCAAGUACAUGUGAAGAACAUACGAGUACGACCGCAAUUCUCGUAUGGGCAUAGACCUAGCUGAUUAAGUUAUCUAGCAAAGGUGGUACCUCUGUAUAGUGGUUUUUCUUAAGUCCUCGCGCAGGAGGCAAAUUUAUGCCGUGAAGGGCAACUGUGAUAUUUAUCGAGGCGCAGGUAAAUAUAUGAGAUGAAUUGUGCACAAAUUGUUUGUGAACCCUGAUUGCGAUGACAUGGUGUCAUACAAUCAGUUCUCUCUAAAGACCUCGGGAACGCCAGAACUCCUCUCGCUGCUGAUAACGUUACGUUCAGAGUGCAUGGGGACUAGAGUUCAUGGAACAGGUACCACUAAUGUUAGUAACCGAAAAGCUUUGCCAUGACAAGGCUAAUGUGUUUGGCACGUCAUGGAUUGUGGGUAAAGCGUACAUCUACUGUUUCUUAAAACUAUUCGAAUAGCCGUGCUCGCGGUUAUCGGGCAUUGGGACUCACAAUGGCAUCUUGGUUAGAAACAUAAUUCUAGAUUUUAUUAAAUACUGUUGCAUUAUAAACAUUAUAGACUUUCUACUUCUACAUUCUCAACUUUCUGCAAUUAAACCUAGCUCUACACAUAUAUUACCAUUUCAUGCAUUCAUUGUUGAUUAAUAUAAUAGCUUGCUGAGUACGUUGUACUCACCCUUGCUUUAACCCCCUUCUUUCAGAGUUAAUUUGGAAUUCUUGCCGAAGCCGGGAGUUCAAUUAUAUAAGUUAGUCUUAUAUAAGUUAGUCUCAUCUCAACCUAAUUCGCAAAUAUAGAUUAGAUAGAUGGUUUAAGUCUAUAGCCAAACAUUAGGGUCAAGUCAUUCUAUAGCUUCUGUUGUAAUAGUUAGCCACAACCUUGUAAAUACCCUAUUAUAUCACAUAAAGAAGUCUCCUUUGGAGCCUUGAUCAAAUGUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
54.47%
ME_num:
MEP:
39.84%
HE_num:
HEP:
5.49%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.79
Avg Expression:
3.16
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 1hA | 4.35570971758307 | 2.84929601305257e-06 |
| 2 | Vialone_Nano // leaf // control--/--Vialone_Nano // leaf // 100 mM NaCl | 3.0493637718799 | 4.23806662147902e-06 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | 4.14077852822478 | 1.09479505730422e-05 |
| 4 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 2.38337402890252 | 0.0186424134810738 |
| 5 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 2.49164746952861 | 6.93880322960971e-05 |
| 6 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 3.99302120968653 | 1.16228239616186e-36 |
| 7 | Nipponbare // coleoptile // wild_type_plus_1hr_shade--/--Nipponbare // coleoptile // wild_type_plus_1hr_white_light | 3.3044025295644 | 0.0434100886356982 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 6.1017511123513 | 4.95975189181333e-14 |
| 9 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 4.06593556262044 | 1.62329356793686e-62 |
| 10 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // gibberellic acid (GA) | 8.33280031374883 | 2.89927659250751e-07 |
| 11 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | -3.30534929401902 | 2.49853884938744e-05 |
| 12 | Baldo // leaf // control--/--Baldo // leaf // 100 mM NaCl | 2.45821242168528 | 0.0473943735479127 |
| 13 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | 3.05889203366147 | 0.0267543709122055 |
| 14 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | 8.03881476094652 | 5.3910135322683e-07 |
| 15 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | 2.9813553671598 | 0.00289649374072371 |
| 16 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | 8.03872284340281 | 5.41948910500408e-07 |
| 17 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | 8.03863936619598 | 5.40877562968858e-07 |
| 18 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 1.97981485328214 | 0.00284110543304089 |
| 19 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | 2.67387546441254 | 0.0118708133936173 |
| 20 | 9L136 // leaf // control--/--9L136 // leaf // salt | 1.46252704295426 | 0.0313884241097519 |
| 21 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 2.58610662642896 | 0.00377617722860979 |