Chr:
Chr3
Start:
15453179
End:
15457626
Strand:
+
Ref_name:
LOC9271829
Sequence
(XR_001544050.2):
CGCCCACCCCGGAUCGCGAUCUCCGCCGUAUCUCUCUCCCAUCGCUCCCCUCUAUAUCCCAUCUCAGCCACCGAGCACUCCCUUCACUAUCGUCGGCGCAGCGCCCUCGAUCUCCACCAGCGCGCCAAUGUCCGCGCCGCCGCAACACCCAAGCCAGCGACGCCACCGAUCCGCGCCGCCGGAACACCCGCGCCUCUCGCUCUCGUCUGUGCCGCUCCCCCCACCCCCUGCGCCCGCCGUAAACCCCUAAUCCUCCGCGCUCCCCUCGCCCUCCUCACGAUCUCCUCCGCGCCACCUCCAUUCUCCUGCCAGUAGCCAGCCUCAAGGCCCUGCGCUACCCAGCCGCCCGUCGUUGCCGCUCCUGCUACGUGGAUCUGGCGGCGGGAUUUGCAACGGGGACGGCGUCGCGCCCUGCUCGUGCUGGCACAGAGGUUGGGGAGAAUAGGAUGUAAAGGUUCCUUGGCUUUGGUGAGUUAUUCACCGUGAUGCAGCUCUGUCCCUGGUGCAAAUGGGAAUGGGAUCGCUCAGGGCAGUCUAAAUCAUGGAGGUUGUUUUGCCUGCAGGUUUCUUUCUUGCGUUAGAUUGGUGGGACCCUCUCCAACGUGUACAGGAAGCUCCUUCCUCUUCUUGGUUUAUCCUCGAUUGGAUUAAAAAUCUUAGAAGAAAUGUUAAUUUUCAGUAUUUAAUUAGGAGCUGUUUUAUCUGGGGAUCAUAUCUUCAUAUGGCCAGCGAUCAUUUGUUUUGAUGGUUUGACUUUGUUUCUGCUACUCAAAAUUACAUGUUUGUCGUCAUCGGGUUUGCCUGUAUAUAUACGAUUAGCUGUGCUUCUAAUUCCAGCCCCCAACGCUACAAGAGUAGUAUCAGUGGAAGUGUUUCCACCUCCAUAUAUAGUUUCUUAUCAGUAGAAUUACCGAAUUACAUCAGAUAUUAUAUAUAUUUUUAUGCGCCAUAUUGGAAAUCUUGUUUCAUGGCUAAUAUUAGCAUUCUUAUUUUUCAGAUCCGAUAAAUUUCAGGUUGCAAUUUACAAGGAUCUCUUUUGGCAGGACUACCAAGUUGCCUGGAAUCUGGGGGGAAAAGUCAACAUUUAUGCACAACAUCGGCAGCAGUGAUCUGCCGUGCAUGACCACACCGAUCGGAUACCUCCUAUGCCUAUAUCCUGUUAUUUCCAGUUGACGUCCGUAGUUCCUCCUCAUCAUUGAAGGUAAAAGAAUUAGCAAUAUAUUAAACAGUUUCUUUUUUUCCUGAAUCAUAAAUCUAUCUCAUUUUAUGUCGGUUGUUAAAACAUAUAUUUUUUAUUUGAUUUGUAUUAUUAUAUAUGGUUUCAUGGGGAGAUAUGGCCAUUCUUUGUUUAUGAGUUUGCCAAUUGAUUAGAGCUAAUUCAUUUGGUGCCAAUCGUCUACUGAAUUUUUUUAGCAGUAUAUGGAUUUUGGGGAAGAAAUAAGGUCGACUGACCACUGCUUUUCUGUUUAUUUUAAUCAAGCUUUCGCUGUUCAUAACUGCACUAAUUUAAUGAGAUUUCAAGUUGGAUUUUUUAAGCACUAAGCACUAAUGGAAUAAAUUUGUACUUUCGGCUCUGUACAAUGUUUAUCUAUCCUGUGAAAUUAAUGUAUGUGAAAUUAAUGUAUGAAGUAUAUUUGUGAUAUAGUCAAAUUGACAAGGAAAAUCAUUUAAUUUUGCUUGGGUAGUCUGGUAUGUUGUACAAUAUUGUGCAUAAUUUUUUUUAAUGAAUACUUGCAUAAAACAGAUGUUGUUAUUUCAGAUUCAGCAUAUGGUAUAUAUUACAGAAUAUGUAUAUAGCUAAGUUAAAAUUUCAGAAUGUAAAUGUGCAUACAUGGAAGCACAUGAUAAGACAGUUUAAGUUAUAAGUUACCAUGGCUACGAUUCUGAAAGUCUAAACCUUUGGAUUCAUCGACAAAUGUAACUCUGAAAGUCUGAACUUUGGUUUUAAAGUCUAAAAGUGUGAAAUUACGAACAUGCACUAGCUUAUAUCGAUCGACCGAUUGAGGCAUGGCCCAUGCUGACCAACGGUGUUGCCGCGGCCGCCAUCUUCACCGUCACCGACAUCUCUUAGGUGAGGUUCCGCCAUCUUCACCAUCACUGACAAACUGAUCAGUUAAUAAAUUGUUGUCUUCUCCAACAAAUACAUGAUACAUCUACUAUUCUGUACUUUCGCAUAGUUACUCUGAUUCUCCAAUUGGUUUCGAUUGAGUUUCUAUCAGUUUUUUCUCUCUCUGUCAAAACUACAAGGGAAGGCCAUAUAUGCCAUGAGACUGAUUGCACUGCAGAACACGUUCCUUCGUGCCCGGUAGUGCAAUUUUAUUUCUCUAUUGCUACGUGUGGUGAAUGAAAAUUAUGGUGGAAUAUUCUGUUUUUAGAUCAAUGGAAGCUAUAUGUAGAGGUAAAAUGUGUAAUAAUUGCAGCCUGUUUUGUUGUAAUAAUUUGGGAGAUGAAUUAAGAACUGAAUUUCCAAAUUUGAUUGCAUGAUGUAUCCAAUUUAGGAAAUGAAUUGAGUUAUAAAUCCUUUGCUUUUA
Sequence
(XR_001544051.2):
GCCCACCCCGGAUCGCGAUCUCCGCCGUAUCUCUCUCCCAUCGCUCCCCUCUAUAUCCCAUCUCAGCCACCGAGCACUCCCUUCACUAUCGUCGGCGCAGCGCCCUCGAUCUCCACCAGCGCGCCAAUGUCCGCGCCGCCGCAACACCCAAGCCAGCGACGCCACCGAUCCGCGCCGCCGGAACACCCGCGCCUCUCGCUCUCGUCUGUGCCGCUCCCCCCACCCCCUGCGCCCGCCGUAAACCCCUAAUCCUCCGCGCUCCCCUCGCCCUCCUCACGAUCUCCUCCGCGCCACCUCCAUUCUCCUGCCAGUAGCCAGCCUCAAGGCCCUGCGCUACCCAGCCGCCCGUCGUUGCCGCUCCUGCUACGUGGAUCUGGCGGCGGGAUUUGCAACGGGGACGGCGUCGCGCCCUGCUCGUGCUGGCACAGAGGUUGGGGAGAAUAGGAUGUAAAGGUUCCUUGGCUUUGGUGAGUUAUUCACCGUGAUGCAGCUCUGUCCCUGGUGCAAAUGGGAAUGGGAUCGCUCAGGGCAGUCUAAAUCAUGGAGGUUGUUUUGCCUGCAGGUUUCUUUCUUGCGUUAGAUUGGUGGGACCCUCUCCAACGUGUACAGGAAGCUCCUUCCUCUUCUUGGUUUAUCCUCGAUUGGAUUAAAAAUCUUAGAAGAAAUGUUAAUUUUCAGUAUUUAAUUAGGAGCUGUUUUAUCUGGGGAUCAUAUCUUCAUAUGGCCAGCGAUCAUUUGUUUUGAUGGUUUGACUUUGUUUCUGCUACUCAAAAUUACAUGUUUGUCGUCAUCGGGUUUGCCUGUAUAUAUACGAUUAGCUGUGCUUCUAAUUCCAGCCCCCAACGCUACAAGAGUAGUAUCAGUGGAAGUGUUUCCACCUCCAUAUAUAGUUUCUUAUCAGUAGAAUUACCGAAUUACAUCAGAUAUUAUAUAUAUUUUUAUGCGCCAUAUUGGAAAUCUUGUUUCAUGGCUAAUAUUAGCAUUCUUAUUUUUCAGAUCCGAUAAAUUUCAGGUUGCAAUUUACAAGGAUCUCUUUUGGCAGGACUACCAAGUUGCCUGGAAUCUGGGGGGAAAAGUCAACAUUUAUGCACAACAUCGGCAGCAGUGAUCUGCCGUGCAUGACCACACCGAUCGGAUACCUCCUAUGCCUAUAUCCUGUUAUUUCCAGUUGACGUCCGUAGUUCCUCCUCAUCAUUGAAGCUUAUAUCGAUCGACCGAUUGAGGCAUGGCCCAUGCUGACCAACGGUGUUGCCGCGGCCGCCAUCUUCACCGUCACCGACAUCUCUUAGGUGAGGUUCCGCCAUCUUCACCAUCACUGACAAACUGAUCAGUUAAUAAAUUGUUGUCUUCUCCAACAAAUACAUGAUACAUCUACUAUUCUGUACUUUCGCAUAGUUACUCUGAUUCUCCAAUUGGUUUCGAUUGAGUUUCUAUCAGUUUUUUCUCUCUCUGUCAAAACUACAAGGGAAGGCCAUAUAUGCCAUGAGACUGAUUGCACUGCAGAACACGUUCCUUCGUGCCCGGUAGUGCAAUUUUAUUUCUCUAUUGCUACGUGUGGUGAAUGAAAAUUAUGGUGGAAUAUUCUGUUUUUAGAUCAAUGGAAGCUAUAUGUAGAGGUAAAAUGUGUAAUAAUUGCAGCCUGUUUUGUUGUAAUAAUUUGGGAGAUGAAUUAAGAACUGAAUUUCCAAAUUUGAUUGCAUGAUGUAUCCAAUUUAGGAAAUGAAUUGAGUUAUAAAUCCUUUGCUUUUAUGUC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
0.2%
ME_num:
MEP:
26.22%
HE_num:
HEP:
73.37%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
carpel
Tau :
0.71
Avg Expression:
27.45
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -1.34819647242296 | 5.73949625261159e-09 |
| 2 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | 3.44041005177501 | 0.0106753400758553 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -1.19453277670212 | 6.83766764455189e-10 |
| 4 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | -1.17726955099333 | 0.00533805740846378 |
| 5 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | -1.17736562038775 | 0.00547746898274314 |
| 6 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | -1.17745664824511 | 0.00535776105492718 |