Chr:
Chr6
Start:
14193803
End:
14195483
Strand:
-
Ref_name:
LOC9271793
Sequence
(XR_003243158.1):
GUUCCACCUACACCGCAUCACGUGCCGUCCACCUGGAUCUUAUCCUCUCCUCCCGCAUCACGCUCCGCCUCCCCCACCGGCCGCGGCCACUGCAACGCUCGCUCUUCCGCCGCAUCGAAUCCCAACGAGCACGUCCUCCGCCUCCUGCGCCGCGCGACCUUCCAGUGCUGCAGCCCGCAGGUGGUCCCUCUCCCAUGCCGCGUGACCUAAGCUCGCACCGCAUCGCCUCCCUCUCUCCCACCAACAGCAUCAGCGCAUCGCAUAAAGGGGAUCGUCGGCAGUAGGGCAAGCGACGGAACGAGCCAUACCACCCGCGCGGCCGCGCCAGUUCAAGGGAAACAUGCGCAGGCCUAGCCGGCUCCCAGUUGUCUAUCCAUCUUCCUCUCCUAAUAAAUGUCACCUGCGUUAUUUGGUUGUUGUCUCGCCUCCCUCUUCCUGUCUUCUUUGUAUAUAUUACACACAUUAUGUUGUUUGUUGUAUUGCUGCACCAUACGAUCACACAGGUUCAUGGAUCCAUCUUCUAGGCGAUGAGAUUAAUUGUUCCCCUUCAUGCUGAUCCCUAUUGUUCCCGGUUCAUCCCUAAUACAGCAUUCCAGAUUUGACUGUAGGUUUAUUUCUGGAUUCAAGUACCCUACAACGUUGAAUAAUAAGUAUAUUGGCACAAUUUUUUUUUGGUACAUACUACUAGAUUUGAUUCCAAAAUAUACAUUUUCUGCUAUGCUCAAUUUUUCAAUCAUUUAAGUUACCUUGCAACUGUCCAUGAAUUUUAUAUUUUAUACUGGUUAUAGUAUUAUGUCCAGUGAAGCAACUACAGUAUUUGAUAUGCAAGUUAUGCGACUAUAGAUUAUUCUUUGAGGUGACAAAUUAUAAAAAAAAAAUGUCAUCCUCCAGGCAGACGGUGAUUUUGCACAUGAUGUGAUUGGAGAUAAUUCCAUCAUAUGCAGCAUGGUGAUCAAUGAUGUAAGUGAAAGGUAUAGUCUCUGCAGGUCCCUCCCUCCUGGGAUUUUCUUUACAAAUGUUAAUUGAUUUCAUAAUUUAAAUUAUAAUAUUAUUAUCUCAAAAAAUUUCUUGAUUUUCCUUAUCUUUCAUUCUUAUGUAUUUGAGGAGGCAAGAACCAAUAACCUUUUUUUACAGAGCGAUUAGCCAAUUGCUAACGUCAGUUCAGUCGAUCAAUCUGCAGAACUUCCCCCCGAAUUUGUAUGUAUAUUAGGUUACUCAUCUAUAAAACAGGGAUUGGUGACUGGGCAAUAAGCUUCAUAUCAUCGAUAUUAGCUGUAUAAGGUAUUUUUCAGCUUUGCUCUUCUCAUUUGGAAACAAGCGUUUGGUCUAUAUAAACUGUGUUCAGUUAGACAAUAGAUAGCCUACAGUAGCUCCAGCCAAAGUAUGUAUAUGUGACCAUUCAAUUGUUGUCGCUACAUGAGAAAGACUUCUCUUUAUCUCAUUUCUUUAAACUUAUUGGUUCAUCAUCCUUAAUAAGCUCCUAUUAUACAAGGACCCUAACUCAUUUCUUUGAAAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
22.15%
ME_num:
MEP:
23.17%
HE_num:
HEP:
54.47%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.71
Avg Expression:
18.03
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 1.65471117048681 | 0.0292147027532624 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 2.92260455952514 | 4.3572702568893e-07 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 1.95078142073848 | 0.0183854706949913 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 3.11118566844827 | 1.13101695931713e-06 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 2.14100780410806 | 0.00499030249620712 |
| 6 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | -1.46690055780176 | 0.000522740031743763 |
| 7 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.84917129730606 | 8.62098324624679e-07 |
| 8 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | -1.07499049004863 | 1.64723820574378e-07 |
| 9 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | -1.23537188200648 | 3.748833659693e-05 |
| 10 | BR-IRGA_409 // spikelet // control condition (29C) for 7 hrs--/--BR-IRGA_409 // spikelet // high temperature treatment (38C) for 7 hrs | 4.53573888620214 | 0.0111859619231734 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 1.53014574266814 | 0.0339985085151718 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 1.42740659677176 | 0.0380386032510982 |
| 13 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -1.09056111139394 | 3.39023513147255e-09 |
| 14 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | -1.37580568206868 | 0.000509976536605265 |
| 15 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | -1.37588818704869 | 0.000530058731324423 |
| 16 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | -1.3759775578421 | 0.000512074916893251 |