RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNC9271758

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr9

Start:

2953249

End:

2956969

Strand:

+

Ref_name:

LOC9271758

Sequence
(XR_001539802.2):

CACAAUGUAUACAGCAGCGAAUUUUCAGUCAUUUCAAACUGUCGUAGUUAUCGUCUCCCCACUUUUUUCGGAUAGUUUUUUUUUCUCGCCGGCGACAGUGAGCGCCCUUCUUCUCUCGUCGCCCGUGCAGCGGAGGUCGCCCGCGCCGCCGCAAGUUCCUUCCAGGCGGGGAGGUAACAUGCUACACAACACCGCCCCCAAAACAUUUUCCCCUGUUGGAUGGCGACUUGGGCGCUCCAUCGACUACUGGAUGGCACCAUGCGGUUGAGGCUGCGACACCCCCCACCCCCACACCCCCCCGCCCUGUGGCACCGUCGGCUGCCCCUUUGUCGCCGACAUCCAUCCCAUCGCCGGAUCUAGGAGAGCUUCGCCCGAAUUCUCUUCUGAUUCUUGCGUGUCGGUGGUGGGUGGAGAGCAGCGGUACCAACGACAUUUGAAGCACAGAGGGUGGCAGGAUUCGGAGAGGAGGCUGCGGAUCAGGGGUCCGAUGGGUCGUUCUCCCUCCUCCCUAAAGCGGUGGCGAAGGAUGUCAGUAAAUUGUUGUUGGCGUUGUGCGCGGCAGGUCAGCGCCGCCAAGGAAUACAGGAGGUCCGUGUAGCGGCUGUAGUCAAUUGAAAUCUAUUUCAGGAGCACAAUGUAACCCGGUGGACUCGAAGAUGAUGAAAUGCAUCAUGCGGUGACCUGGGAAACAUUGUCGCUAGCGCCGGAGCGGCCAUGCUUGAUCCUGGGCUGCCCAUCCUGAUUCCUAAUGCUACCGCCACACAGUCCUGUUCUACGCUGGUUGGUUGGCGAGCCAGCCGCCUCCACUACAACAUUCGUCCAUCAAAGAUGGAUCCCGCGGUGAAGAGGAGGAUAUGCUGAUCUGAAUUUCUUUGAUGAUUUUUGUUGGAGUGUUUAUAUCCUUUGUAACUUUUUUACUUUUGAGUUUAAGCAUAUCAUUUGUUUAUUGUAUAGUGUGUCUGAAUGUAACAGAACCCGUGUGUAAAAGAAAAUAUUGUCAAUAGAGGCUACAAUGUUAACUGGUAGCUUGGUUUUCUGAUGAAUACAAGUUAAUUGGUAAUGUAGUGUGGAGGUGAAUAA

Sequence
(XR_003238464.1):

CAAGGGAGGUUCGGCCGAACCUGGGGCUGACCCAAUCCAGCCCAAUUUCGGCUGGCGGCCGGCCUCCUCUGCUGCUUCACUUCGUAGACUUGUGAAUUUUGGCCUGAUUCAUCUUGUCAAUUCUGAGUUCUUGGCCCAUUCAUACACAAGUCUGGUUCUCGACAUCGUCCGAUUGAUUUAUCAUCUGAGUUGAUGUCGAUUCUCCUCCACUUUAUUGUCAUUCUCUGCAAAAGGUUAUUAGACCUAAUACUAGUGGAAUAUUAUUAUUCUAACAUAUUUAUGCAUUGCAAGCAUCACUAGUUCUCACCUAUUUUAGUAAUAUUGACGGUCGAAACUAGUCGAUAACGACCGUCAACACUAACCCUGUCUGACUCGAACCCUGCCGAUCUUAGUCGUAGCCAAUUCGGACUUUAGCCGAUCCUCACUCUAUUUCAGGGACAAUCUCUAUCUCGAACUCCGUCUUGAUUCCUCCUUCACGUCCGAUCCUUGGAUUACCAAAUUUGGUCGUUAACAGAACCCCAACGGCAAGGCACCUCCUCCCCUCCCCUCCCUCCCUUCACCCGCAACGCAACAAGACCCCCUUCUUCUUCUCCAGCAAGGCAGCAACCUGGAUCGACCAAAGACCAAUGGAGCUCUCGGAAUCCUCCUCCAACGCAAAUCUUCUUGGACAAUCUUCCAAAGUCAGAAAGUCAAACCCGCCACACGCCUAGUAGACUUGCGCGGGGGAGGGAGAAGGCAGCGGCGUUCCCGGAGUCCACCGUGCGGAGCGAGCACCUCGCAGCGAUGGCGACGGCGAAGGCGGAUGAUCUCCUAGCGCCAGCAGAGGAGACGAGCAGCGUCGGUGGUUGGAUUGGGAGUCCGCCGCGUGGAGUCCUCCCUACGCCAACAACGGUUCAACGGAGGCGGAACAUCGCGCGGAGCGGGCACCUCCCGGCGACGGCGACGUCGGAUGACCUCCCAGAGCCAGCAGAGGAGACGAGCGGCGUCGGCGGUUGGAUAGGGAACCCUAACCCUAAAUGCACCUCAAAUCGCGGAGACGAACGACGAGCGCCGUCUACGCGCCGGCUCUGACCUGUGCCUCGUCACCCACCUCGCCCGCCGCCAUCGCGCCUCCGCCGCCCCCUCCUUCCCCUAACCCUAACCGCACCUCAAAUCGUGCCGCCGCGCGGAGUCCUUCCCGCCAGCGGCGGUUCAACGAAGACGGUAGCGGCGGGGGACUGGAUGUCGUGGGGGAUUGGAUUUGUUUUUUUUUUUUGCAUUUUUAUUCUGUGGCGACGUGGUCAGCCGAUGGUGCACGCUUGCGCGGUUUGUUUGGGCCGGAUGACAGGUGGGUCCCAUGGGAUAGUGGAUAUGAAGGAUUGCAGAAUUAUGGAUGAACUCGUAUUUUUUAUAUUAGUAUAGAUGACUGCAAUUAAUUGUUAACCACGAGCCAUUUUUUUAAUUUUUUUCAGGCACAAUGUAUACAGCAGCGAAUUUUCAGUCAUUUCAAACUGUCGUAGUUAUCGUCUCCCCACUUUUUUCGGAUAGUUUUUUUUUCUCGCCGGCGACAGUGAGCGCCCUUCUUCUCUCGUCGCCCGUGCAGCGGAGGUCGCCCGCGCCGCCGCAAGUUCCUUCCAGGCGGGGAGGUAACAUGCUACACAACACCGCCCCCAAAACAUUUUCCCCUGUUGGAUGGCGACUUGGGCGCUCCAUCGACUACUGGAUGGCACCAUGCGGUUGAGGCUGCGACACCCCCCACCCCCACACCCCCCCGCCCUGUGGCACCGUCGGCUGCCCCUUUGUCGCCGACAUCCAUCCCAUCGCCGGAUCUAGGAGAGCUUCGCCCGAAUUCUCUUCUGAUUCUUGCGUGUCGGUGGUGGGUGGAGAGCAGCGGUACCAACGACAUUUGAAGCACAGAGGGUGGCAGGAUUCGGAGAGGAGGCUGCGGAUCAGGGGUCCGAUGGGUCGUUCUCCCUCCUCCCUAAAGCGGUGGCGAAGGAUGUCAGUAAAUUGUUGUUGGCGUUGUGCGCGGCAGGUCAGCGCCGCCAAGGAAUACAGGAGGUCCGUGUAGCGGCUGUAGUCAAUUGAAAUCUAUUUCAGGUACAGCUCGUUAGUUCCUAUCAACUAAGGCUGUGUUUAGAUCCAAAGUUUGGAUCCAAACUUCAGUCCUUUUUCAUCACAUCAACCUGUCAUACACACAACUUUUCAAUCACAUCAUCUCCAAUUUCAACCAAAAUCCAGCCUAAGUAGUAGCGUUAUAUGGUAUCAGUAGUUUUUUUAUCAGCCUGUAUUGGAUUGCACCGUCGUUUUGAUUUUGGAUGAGCUAUGUGCCUGUGUUGGCUGUGGGGAUGCGGUUUUGUUAAGAUUGGGUAGUAACAACUGAUUAAUGCCUGCCGACGGAAGGGCAUGCAUUUCAAUUGGCAGCCAACGGGAUGAAGUUAAUAUAUGUCAGGUACCUAACAGAACUAAUCUAUUCAUGUGUUUUGUAUCCGUGUAUUGAGUGGACACAUCCAACCUAAACACAUUAGAAGUUGUUUGGUGGAUGGCUUCGCUUGGUGCUAUAAGUGUAUACGUGAUGAAUCAUGCAUGCAGGGCUGUUCUUAGCUUCUGAAAACAAUAGAAGAACUAGGAUGAUCUGUAGAUGUGCACAUGUGGCCUAGAGUCAGCUUAGGUGUCGCAUUCUCUGACAAACGAUUGCUUUGGUAAACCAAGACUGGUGUUUUUUAUUAGUACUAAUUUGGUUUAUUUGAUUAGUUGUAUAUACAAUCAAUUGUUUCCUGUAAAUAAUUUUGACUGAACGUUACAAUGGAAGUUAUUCUAUGUCCUCCAUGGCAUUCAGAUGGUAACUGAAAAUAUAUGAUCGCUGGUAGGAGUAUGUGCUUUCAACUCUGUAGCUUGCAGCAGUUCUCUUGGUAAAAACGAGCCAAAAAUUCUCUAAUAAGCUUAAUCCACACGAUCAACAAUUCAUAAGCCUCUUGAUCAACGUUUUGCCACUUAUCCCUGAUAUGUACCACCAAAUGCCCAUUUAGAUUUCCCAUGAGCUUGCACUUGCAUUAACUUUUGGCUUUUCAGCCUGCAAGCAUCACCAUGUCCUGUGCAAUGCUCAGUUGCUCAUAGCCUCAUACUAUGAGUCAAUCCACUAAGGCAUCCCUACUCAUAGUGCAUAUAUAUGGCAAAUUUUGGUCUUGCAGGAGCACAAUGUAACCCGGUGGACUCGAAGAUGAUGAAAUGCAUCAUGCGGUGACCUGGGAAACAUUGUCGCUAGCGCCGGAGCGGCCAUGCUUGAUCCUGGGCUGCCCAUCCUGAUUCCUAAUGCUACCGCCACACAGUCCUGUUCUACGCUGGUUGGUUGGCGAGCCAGCCGCCUCCACUACAACAUUCGUCCAUCAAAGAUGGAUCCCGCGGUGAAGAGGAGGAUAUGCUGAUCUGAAUUUCUUUGAUGAUUUUUGUUGGAGUGUUUAUAUCCUUUGUAACUUUUUUACUUUUGAGUUUAAGCAUAUCAUUUGUUUAUUGUAUAGUGUGUCUGAAUGUAACAGAACCCGUGUGUAAAAGAAAAUAUUGUCAAUAGAGGCUACAAUGUUAACUGGUAGCUUGGUUUUCUGAUGAAUACAAGUUAAUUGGUAAUGUAGUGUGGAGGUGAAUAA

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

282

LEP:

57.32%

ME_num:

203

MEP:

41.26%

HE_num:

6

HEP:

1.22%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

shoot_apical_meristem

Tau :

0.83

Avg Expression:

4.81

Tip: OSA-LNC9271758 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h-6.403828067984280.000217758835651247
2Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days"1.294141427886270.0218739372778697