Chr:
Chr4
Start:
23727413
End:
23733908
Strand:
+
Ref_name:
LOC9271752
Sequence
(XR_001545555.2):
CAAAAAAAAAACAUCAAAAACCACCUAUACGGCGAUACGUGUUCGAUUCUGGAUGGCUUCAUAGCCGUGAUCUGGUGGUCGCCGGCUCGCCGAUCUCUGCUCCCGCGGCGGCGCCAUUGCUAGCGCCCCGUCGGCCGGCACCCUCCUCUCCGCCUCCGCCCCCACGCUCCGAAUCCAUGGAUGGCUACCACCGCACACUCCGCCCCCCGCACUCCAGCCGCCCUCCGCGCUCUUGCCCUUCCCCCCACCGGAGAAGGCGGCAACACUGCAAGCUAGGUAGCAGCGACGACCUUGCUACCGGCUCGCCUCAUCAGCCAUAGCGGCAGCCUCCCGAUCCCCCCAGGGUGAGCAUCCGGGAGAUUUUAACCCUGGUGGGAUCACCUUGGAGAUUGAAAAAGAAAUGCAGAAUAUUGUGCUUGAGAACAAAAGAGAAAAUGUCUUUAAAUAAGCUGUCUGUUAGUAAAUCUAUGACAGUGCAUUGUAUCUACUACCUCCAUCCCAAAAUAUUUGGGAUUUAUAUGGGCAAAAUCCCUUAUAUUUUGGGACGGAUGUAUUAUCAUUUUAUUUCUAAAAGAUAUAGUCAUGUACUUGGAAGAAUUCUUGACCACGAGAUGGAAAACCUGUAUGCAUCCAUUCCCAUCUCCUUCAUAAUGCGCACAUCUUCCUGCAAUUUUUUUUGGUGAUCAGGCCCUCAGGCCUCAGGAUGAGUACUAAAUUAGUCAUUUUAAAGAAGAGAAUUAAAGUUUUAAGAGAUUGUGGCAGAGGAAGACUGGCAAACAUGGAGUGUAUAUUUAAUUAAAACCCUUACUCCCUCCAUUCCUAAAUGAUCUUCGCAUUACCAAAAGUAAAAAGUUUCAAUUUGACCUUCGUAUUUCAUUAGGAAGCAGCAGAAAUCAUGGGUAGACGAUAAUGGUGCUUCGUAUUAAGCAGCACUACAUGCAUGCAUUGGCUCUGUGAGAGUUAAGUUGGGAGCUGCUGCAUGCGUGGAAUUAAUGCAUUAUAGCUGAUUGGCUGGUGCAUGCGGCAUGCAAAAUUGAUGAAGCGACAUGCACGGAUAGAUGGGAUAGUAACUGCUCCUUGGUCUUGCUGCUUAGGUGAAAUAUGAAGAUCAUUUAGGAAUGGAGGGAGUACUAAAGUCAAUGCUAGUUGCCAAUACCUUGUAGAGAUGGUAGCUAUUGCAAGCACCAUCCCCGUUGCUCUUGUCGGUGAUUUUGUCUGCCAAAUUAGAGAAUUGUCAAUCCAAAAUAAUGUAAUGACCUUUUAUUUCUGGCCAUUUAUAGUCAGCAUGCCUGGAUACUGAUGUGUGAAGGUGUCCCAGAUGCUUGGUCCUCUGCCACCCUUCGCCGCGGCACCCUCAAACUGCAUCAUGUGUGAAACAGCAGUCAAUUUGUCAGGUUUCAGAUCUGAAACAGAGCACAUCGUGAUGAGAUGAGAAGGAAUCAGGAAACAGUUAAAUUGACUACUGAAUACAGUAUUGGAUCAUGGAAUUUCUCUCUACAUGCAAAUAUGAGCAUUAUUCUUAUUCUUUAGAGAAAUUUCAGCAUUUUUCAGUGCCAUCAUUUUCUGGUUACCUACAUCAAUGAGGUACUCUAGUUGCACAAUUUAUCUUAACCUGUUCCUUUUUCAUGUGUUUCAUUUGUACAUUCUGUUCGUACUUUUGUUUCCCCUUCGAAAAGAACAGUCUGUUCCGACUGUUGUCCUUGCAGAAUUUACUUUCGGUGGCAGUUUUAUGAAAUUCUUCUCGAUUUCUUGUAGGAAGGAUGAGGUUGGAUGCCUGACCUGAUAUGACGACGAGGACGUCCCAAAGAUGAACCCCUUGGGGAAGCUUCUCCGGCUGAUCGGCGGCAGCUCGCCGGCGUCAUUGUAGGCGGCGCAGGUGAAAGCCAAGAGGAGAAGGAGCACGCCACCUGACAUCACCAUUGCACCUGCAACCGCCAUGACCUACAUAGACAGAAAAGAGUGAUGGGCUGAUGAACACAAACGGUGCCCAACAUAUAGCCUCUCGUACAUAGGGACUUGCUUAAUACCAUAUCAGGAUAUGUGUUUGGACUUGUGGACAAGGUGGGGAUAAUGGUUUUUCAGAGUGGUGACCACCCUGACAAAACACUAUCAACACACCCAUCAGUAGUCAGUGGGAGUACACUGUUUCCAUCCCAUAAUAAGUUUAUUUUUGAUUUCUCUCAUUUAUCUCAAAAUAAAUUCAUUUUGAGUAAUUAUUGUAACAGAGUUUGUGAAAGGAGGAAAUAAUUGCAUUAGGAGUAAUAAAGUAGGAAAUAAUUGUAUUAA
Sequence
(XR_001545556.2):
AACAAAAAAAAAACAUCAAAAACCACCUAUACGGCGAUACGUGUUCGAUUCUGGAUGGCUUCAUAGCCGUGAUCUGGUGGUCGCCGGCUCGCCGAUCUCUGCUCCCGCGGCGGCGCCAUUGCUAGCGCCCCGUCGGCCGGCACCCUCCUCUCCGCCUCCGCCCCCACGCUCCGAAUCCAUGGAUGGCUACCACCGCACACUCCGCCCCCCGCACUCCAGCCGCCCUCCGCGCUCUUGCCCUUCCCCCCACCGGAGAAGGCGGCAACACUGCAAGCUAGGUAGCAGCGACGACCUUGCUACCGGCUCGCCUCAUCAGCCAUAGCGGCAGCCUCCCGAUCCCCCCAGGGUGAGCAUCCGAUCUUCGAUUUAAAUUAUUAUCACGGAUGAACGGCGACUGCCUGAUAGCUUCUUCAGUGAACUGAUAUUUCUCUUUAUAAAGCCGAACAGUUUCUGCAUGAGCAAGUAGUUGGUGAUGGCAUGCAGUGUAAGGCUCCCUUCCUGAAUCUCCAACUCUGCAUUUUCCCUUCUCCCAGGAUGAACACCGGCCUGGUGCCAUGGUGCCAGAUGCAUAGCCCAUAGAGCAGAAGUUCCAAGGCUCAUUGAAGUAGCUGAAAAGACUAUCACAAGGGAGCACUAUUGAGGCUGGUGUCAGUGGAAACAGGGGUUAAAUCCUGUCCAAAGCAAAACCCGUCCUGACUCCCUUUCCAAAAAUAGCAGUAAACAAUAUUCGCGACAAAAAUCGGAAAGAGAACUCCAAAAGCUGUUGGCAUUGAAAUUUCGGGUAUUCUAAUUGAUAUGCAUGAUGACGUUGACAAUAUUUUUAACUGAAGUAGGUAGCACGGUCCCUAGUAUUUUGAAGUUAGUGUUUAUUUAACAUGGUCAGCAAAAGGUACUGAAGAAUUGUUGACUUACAUGAUAUUAGGGCUAAGAAAUCCUUUAUAUUUAUCUUCCAGUGCCUGAGGUGUAUCAAAAUGGAAUAGGGUAGCAAAUGGUUGGACCUCUGCAAAUGUAUAAGAUUAUUUUGCAUCUUGAAUAAAGAAAUCUGGUUGUCACAAGUUGCAUCUAGUGACUGAACUUGAAACUAAAUAGUGAAGACUAGACAUGCAUACCUUUUGAUAAUAGUUCAUUGAUCAAAUUGUUGUAGUAGUUGAUGCCUUCUCUGUUGACUCCACCGCUGAGACUUCCAUCUGCCAUGACAGGGAGAUUUUAACCCUGGUGGGAUCACCUUGGAGAUUGAAAAAGAAAUGCAGAAUAUUGUGCUUGAGAACAAAAGAGAAAAUGUCUUUAAAUAAGCUGUCUGUUAGUAAAUCUAUGACAGUGCAUUGUAUCUACUACCUCCAUCCCAAAAUAUUUGGGAUUUAUAUGGGCAAAAUCCCUUAUAUUUUGGGACGGAUGUAUUAUCAUUUUAUUUCUAAAAGAUAUAGUCAUGUACUUGGAAGAAUUCUUGACCACGAGAUGGAAAACCUGUAUGCAUCCAUUCCCAUCUCCUUCAUAAUGCGCACAUCUUCCUGCAAUUUUUUUUGGUGAUCAGGCCCUCAGGCCUCAGGAUGAGUACUAAAUUAGUCAUUUUAAAGAAGAGAAUUAAAGUUUUAAGAGAUUGUGGCAGAGGAAGACUGGCAAACAUGGAGUGUAUAUUUAAUUAAAACCCUUACUCCCUCCAUUCCUAAAUGAUCUUCGCAUUACCAAAAGUAAAAAGUUUCAAUUUGACCUUCGUAUUUCAUUAGGAAGCAGCAGAAAUCAUGGGUAGACGAUAAUGGUGCUUCGUAUUAAGCAGCACUACAUGCAUGCAUUGGCUCUGUGAGAGUUAAGUUGGGAGCUGCUGCAUGCGUGGAAUUAAUGCAUUAUAGCUGAUUGGCUGGUGCAUGCGGCAUGCAAAAUUGAUGAAGCGACAUGCACGGAUAGAUGGGAUAGUAACUGCUCCUUGGUCUUGCUGCUUAGGUGAAAUAUGAAGAUCAUUUAGGAAUGGAGGGAGUACUAAAGUCAAUGCUAGUUGCCAAUACCUUGUAGAGAUGGUAGCUAUUGCAAGCACCAUCCCCGUUGCUCUUGUCGGUGAUUUUGUCUGCCAAAUUAGAGAAUUGUCAAUCCAAAAUAAUGUAAUGACCUUUUAUUUCUGGCCAUUUAUAGUCAGCAUGCCUGGAUACUGAUGUGUGAAGGUGUCCCAGAUGCUUGGUCCUCUGCCACCCUUCGCCGCGGCACCCUCAAACUGCAUCAUGUGUGAAACAGCAGUCAAUUUGUCAGGUUUCAGAUCUGAAACAGAGCACAUCGUGAUGAGAUGAGAAGGAAUCAGGAAACAGUUAAAUUGACUACUGAAUACAGUAUUGGAUCAUGGAAUUUCUCUCUACAUGCAAAUAUGAGCAUUAUUCUUAUUCUUUAGAGAAAUUUCAGCAUUUUUCAGUGCCAUCAUUUUCUGGUUACCUACAUCAAUGAGGUACUCUAGUUGCACAAUUUAUCUUAACCUGUUCCUUUUUCAUGUGUUUCAUUUGUACAUUCUGUUCGUACUUUUGUUUCCCCUUCGAAAAGAACAGUCUGUUCCGACUGUUGUCCUUGCAGAAUUUACUUUCGGUGGCAGUUUUAUGAAAUUCUUCUCGAUUUCUUGUAGGAAGGAUGAGGUUGGAUGCCUGACCUGAUAUGACGACGAGGACGUCCCAAAGAUGAACCCCUUGGGGAAGCUUCUCCGGCUGAUCGGCGGCAGCUCGCCGGCGUCAUUGUAGGCGGCGCAGGUGAAAGCCAAGAGGAGAAGGAGCACGCCACCUGACAUCACCAUUGCACCUGCAACCGCCAUGACCUACAUAGACAGAAAAGAGUGAUGGGCUGAUGAACACAAACGGUGCCCAACAUAUAGCCUCUCGUACAUAGGGACUUGCUUAAUACCAUAUCAGGAUAUGUGUUUGGACUUGUGGACAAGGUGGGGAUAAUGGUUUUUCAGAGUGGUGACCACCCUGACAAAACACUAUCAACACACCCAUCAGUAGUCAGUGGGAGUACACUGUUUCCAUCCCAUAAUAAGUUUAUUUUUGAUUUCUCUCAUUUAUCUCAAAAUAAAUUCAUUUUGAGUAAUUAUUGUAACAGAGUUUGUGAAAGGAGGAAAUAAUUGCAUUAGGAGUAAUAAAGUAGGAAAUAAUUGUAUUAAGAUUAGAUAAAAUAGGGGUAUUCUAGUUUCUUUUGUUUGUA
Sequence
(XR_003241905.1):
AAAAAAAACAUCAAAAACCACCUAUACGGCGAUACGUGUUCGAUUCUGGAUGGCUUCAUAGCCGUGAUCUGGUGGUCGCCGGCUCGCCGAUCUCUGCUCCCGCGGCGGCGCCAUUGCUAGCGCCCCGUCGGCCGGCACCCUCCUCUCCGCCUCCGCCCCCACGCUCCGAAUCCAUGGAUGGCUACCACCGCACACUCCGCCCCCCGCACUCCAGCCGCCCUCCGCGCUCUUGCCCUUCCCCCCACCGGAGAAGGCGGCAACACUGCAAGCUAGGUAGCAGCGACGACCUUGCUACCGGCUCGCCUCAUCAGCCAUAGCGGCAGCCUCCCGAUCCCCCCAGGGUGAGCAUCCGGAAGGAUGAGGUUGGAUGCCUGACCUGAUAUGACGACGAGGACGUCCCAAAGAUGAACCCCUUGGGGAAGCUUCUCCGGCUGAUCGGCGGCAGCUCGCCGGCGUCAUUGUAGGCGGCGCAGGUGAAAGCCAAGAGGAGAAGGAGCACGCCACCUGACAUCACCAUUGCACCUGCAACCGCCAUGACCUACAUAGACAGAAAAGAGUGAUGGGCUGAUGAACACAAACGGUGCCCAACAUAUAGCCUCUCGUACAUAGGGACUUGCUUAAUACCAUAUCAGGAUAUGUGUUUGGACUUGUGGACAAGGUGGGGAUAAUGGUUUUUCAGAGUGGUGACCACCCUGACAAAACACUAUCAACACACCCAUCAGUAGUCAGUGGGAGUACACUGUUUCCAUCCCAUAAUAAGUUUAUUUUUGAUUUCUCUCAUUUAUCUCAAAAUAAAUUCAUUUUGAGUAAUUAUUGUAACAGAGUUUGUGAAAGGAGGAAAUAAUUGCAUUAGGAGUAAUAAAGUAGGAAAUAAUUGUAUUAAGAUUAGAUAAAAUAGGGGUAUUCUAGUUUCUUUUGUUUGUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
0
LEP:
0.0%
ME_num:
MEP:
38.01%
HE_num:
HEP:
61.79%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.61
Avg Expression:
14.71
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 1.04315144705386 | 1.05534856537391e-05 |