Chr:
Chr9
Start:
9320101
End:
9322041
Strand:
-
Ref_name:
LOC9271743
Sequence
(XR_001539698.2):
ACUGUUAUCCAUUCACUCUCUCCCCCUUAUCCGUUCACUCUCCCUCUCUCUCUCUCUCGGCGCGGCGGCAGCGGCGCGUCCCCCUCGCAGCCUGCCCCCCUCUCCUCCUCCUCCUCCUCGUGGCGCCCUCCAAGUCGUCGUCGGCUGUGGCGGCGGCGGCGGCCAAGGUGCGGGAGGAGGGAGAGGUCUCCUCCUGCGCCGACGACGACGAUGUGAGGAGGGCUCCCGACGGCGACGACGGUGACGAGGUGAGGAGGGAGAGGUCUCAUCCGGCAGCAGCAGCAGUGAGGAGGGCUCGAUGGCGUCCAGCGGCGAGGAGGUGUGCAGCGGUGGUGUGGUGCGGCGGCGCUAGGCAGUGCUAGGCGGCGAGGAGGAGGCGAGCGGCGGCGGCAGAUCCAUCCCACGAGAGCGGGCGCGUGUUCGCCGCGGGCCUCAACGACUUUGGGCAGCUCGGGAUAGGCUCCUCCGUGACUCAUCCGCUGGUACUGCUUCUUGUGCAUCAUGCCUCCAUGUGAAAUUUUCAUCUACAUUGUGAGUCAGCCUACUUUUGCACAGGAGGCAAAAGCUGGCUGGACAUAUAUCAGAAUUGCAAUUUUCACUCCUGUAAAGUUUCUUUUGUGUGCAAAUCAUUUUCCAGUGCAACUGCAGGUUCCAAUUUUUGUAGGUGUCAUGUAGAUGAUUCUCAUAUAUGUUCUUCUCAAUAUGAAUUUUCUUGUUCCUGUUCGAUGUCUGCUCUAAUUUUUGAUGAACAACGAUGUCUGAAUCUGAAUAUUUAAACUAGGCAUAUUUUGAGUUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
0.2%
ME_num:
MEP:
17.48%
HE_num:
HEP:
82.11%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.79
Avg Expression:
64.56
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 1.1216511114245 | 0.000722225748967725 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 1.14531688694616 | 0.000183751535728794 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 2.17061358933398 | 2.73731433806912e-17 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 2.28401208116265 | 8.50586816940168e-17 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 1.22845857753097 | 0.000298442179294799 |
| 6 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | -1.87568045915825 | 8.5708420743734e-08 |
| 7 | Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.19336300395161 | 0.0353781730490752 |
| 8 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -2.13622681583518 | 1.81891160276382e-13 |
| 9 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | -1.06463609380367 | 1.67358830005826e-05 |
| 10 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | 3.27165662422017 | 3.55844495799317e-07 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 1.23616781712075 | 2.34664784106769e-05 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 1.25244770415863 | 4.78217044954084e-06 |
| 13 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -1.13888965760352 | 5.27108653838258e-08 |
| 14 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | -1.08891277868906 | 1.00144019699808e-08 |
| 15 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 1.44990765749408 | 5.94348015092173e-08 |
| 16 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 1.11835369632337 | 0.000582023555860456 |