Chr:
Chr11
Start:
8552604
End:
8554394
Strand:
-
Ref_name:
LOC9271718
Sequence
(XR_001540972.2):
CUGUCUAUCUCCCUCCCUGUCAUUCUAUCUCUGCCAUCUCUUCCCAUCCCUCUUCCACUAAUCAAUCUCUUCCCCUUCCUAAUUAAUUUCUCCACUUGAAUGACAAAAAUUGAAUCAACCUAUUGAGCUUGAUCUGUUUUUUCCAAUUCCCCAGCCACCUCUCCAUCUUCUGUCCGUUCACCUCUCCGUAACCGUGCUCCAGCCGCUUCUUCCACUUCUCGCCAUGAAAACAGCGCCACAAUUUCCAAUUCCCUGCAGAUCCCUUCAUCUCCUCCUUCAGUUUCUCAUCUUCAAGGCCAAACGUUGAAUCCUCCUCAAUUGCUAGACUAUUUCUCUAAUAGCUGCAGCACCCCUCUUCCUUUCCUCUUUGUUUAACCACCACACCACUGCCCCAGCCAUGCCGUGCUGCUGUUGCUGCUGCUGCUGCUUCCGCAACACCGUGCUGCAGCAUUGAAGCUCUCCCACUUCGCUUGUACGCCAUUGUCCUGCUGCUCGGUACCUCGAGCCGGUGCCAUCGUCGCAGCCCGAGGGAGGACGGCUGCCAUCACGCCUGCAAGCCGCCUCUCUGCUGGCUGCCGGGAGGUCAAGCCGUUGCCAUCGUCUUCUUGUUUCAAACACUGCUACAUCAUCGAGAGGUCCCUCAAUUGCCGGGGAUUGGUGCAACGUUGUUUUGCCCAUCCACCGCCUCCUGUGCUAUCUUUUAUCAAGCUGUCCACCAGCGCCGACGAUUCUCUGUCAACCACCCGCUGCUGCUGCAACUUCUCCUUUGCGCCACCAACUAAAUGCCAUCAUCGGUGGUGAACCACGUUGCUCCUUCAUGUUCGGUCGCCGUCGCCUGCACGCAGAGGCGCUGCUGCCGUCGUGGAACCAGAGCCGCCCUCUCGCCAUCCACUUCGGAAGCCCAAGCCACUGAUGCCAUCUUCUCCUUUGCUGGAGCUUUGUUGCUUCAUCUUCUCUGCCAUGGCUGGUAAUCCCCUGCACUCCAUCCAUGUACUGUUUUGUUUCCUCCAUUCAAGAUCAAAAUUUAAAUCACUAAUCAUCAGUUAGCCCCGUUUUCACUGUCCCUCCAAUUCUCGGUUGGUUGUUCAUCUCCUUUGCAUAUACCAACGUGAAUUUUUUUGAGAAUUAAUAUUAUUUUUAUGGAAAAUCGCAAAAGUAGUGGUCAACCGGAGAAAAUCGCGAAAGUAGGUCCCUGUCGAACGGGUGCAGUUCGAUAGGGCGCCUAUCGAACGGCCAGAGCGCGACUGGCGAGGAGAUCGGAAGGCUACCGUUCGACAGGACCUGUCGAACAGCCCCCGUUCGACAGGCAGGGCUGUCGAACUGCCCCUGUUCGACAGGAGGGCUGUCAAACUGCCCCUGUUCGACAGGAUAUCCGUCGAACUGGCGUAGUUCGACAGGGUCGCGUUCUCCAUUUAUUUGUAAUAAGUUAUUUUUUUAAUAAUAUGUAAUUUAUUUUAGUGUGUAAGAAAGGAAAAUAUUUUUGUAAUGUUAUAUGUAUAUGAUUUAGGGUUUUGAUAAUGUUUGGUAAGAAAUUGUAGUAUUUUUUUGUUGGUUAAAAUAUUUGAAUUAUUUAGUUUCAUUAUUUUUUGUAUAUUUGAAUGAUAAUUUGUCAUGAUUCAUUUGAAGGAUAUGCUACUAAGUAAUUAUCCGAAGAAGUUUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
38.21%
ME_num:
MEP:
39.63%
HE_num:
HEP:
21.95%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
panicle
Tau :
0.74
Avg Expression:
5.95
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | -4.75837407178519 | 0.0311334342928192 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 4.62091664979379 | 0.0126792881696343 |
| 3 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -2.61035565903727 | 8.9647371800824e-11 |
| 4 | Nipponbare // root // "mock,14_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),14_days" | -2.3494741885073 | 0.010290013639947 |
| 5 | Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days" | -3.75214229341047 | 0.000149197511925617 |
| 6 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // Paclobutrazol (PB) | -2.6850174018058 | 1.49050389538395e-08 |
| 7 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // gibberellic acid (GA) | -9.85541798486017 | 1.49659589057873e-13 |
| 8 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | -2.97075098755701 | 0.00698213283196578 |
| 9 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | -2.97081832599679 | 0.00711852010521246 |
| 10 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | -2.9709763804415 | 0.00700088525670095 |
| 11 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -2.02949584619374 | 0.000403810253645002 |
| 12 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | -1.54843772925096 | 0.00324818906464534 |
| 13 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -2.71501016261577 | 1.1724321893921e-05 |