RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNC9271704

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr11

Start:

12010686

End:

12013495

Strand:

+

Ref_name:

LOC9271704

Sequence
(XR_001540962.2):

UCUCUCUUUCUCCCGUAACUUCUUCCCUUUAUUCUCUCUUUCUCCCGUAACUCCCGUCACGCGCCUCAAUCUCGCCGCCGAUCUCCACGCCCCGCGCCGCCCCUCAAUUUGCUCCGCAGCGCCACCGAUUCCUAUCGCCCUCCUCCCCUCGCGAUUCCCUACCCGCCGCCCUCCAUCCCCGGCCUCGCGCCGCCGCCUCCCUCGCCGCCAAUCCCCAUCGACCGUCACCCGCACGUCUUCCGCGGCCACGCCACCGUCGAUCCCCGUCGAGCACGACCACGCCUCACGCCGAUCCUCCAUCGCGCGCCGCCACCGAUCCCCUCCCUCGCGACGCCGCCUCCCUCGUCGCCGAUCCCAUCGACCGUCGCCCGCACGUCUUCCGCGGCCACGCCACCGCCGAUCCCCAUCGACCACGACCACGCCGCCCGCCGAUCCGUAACAAGCCUGCCGCCAGGCCUGGGUUCCAGUCUUCGCCGACAAUGCCGGUGCCACCAUCCACCACCACCGGAUUGGAACCGCGCCUGGGCACCACCACCUUCGUGCCGCCUUUGUGAACCAAUUUCUUCACAUUCUUUGCAGCUCAUGAAUGCCUCAUUUCAAAACAAAAAAAACAUUAUCUAUUAUACCAUAAGAGCUCCCCUUUAGCAAUUGGUUAUAUCUUCAGUAAUGACAUUUGAACAUGGACAGAUAGAGGUACAAAUUAUAUGCCCUAAGAGCAUGCAAUUACUAAAUUUGGUAUGGAGUAGGGCAAGUAUAUAUAUAUAAAUUAGUUGUACGGAGUAGAACAGGUAUAUAAUGGGAUUCGUGUUUACCAUGCAAUUCUGAAUUGGUGAUGAAAUUUCAUAGGUUUUAUAUGUGUGAGUUUAUCACUGCUGCUGCUGAUGUUAUAGUUAAAUGAGGACCACUCUGUUAAUGUACUGGAAAUUGGAAACUACAAAUUUAUAUCACUGUUACAUGUUGAUAUUUAUAUAAAAUUCGACUUUUGAGUGUACAACCAGAACUCCGUAUAUUAAAGAUAAGACUCGUAUCAAAAGAAAAUGAGGUUGUCCUCGAAAACCCAUGUGCAAUAUUCACUAUUCAUAUCCUACAAAUUGAUUGAUGGUAUGGAGGGGGCUGGGCUUAGAAUUAUUAAUAUGGUCAACUCAGGCAAUCUUGCAUCUGGUUGCCAUCAGUGGGGCUUUCAUUCAGCAGAAAUUGUCUACAAAAUGCACCCUUUAUAUGUACCUGUUUGCACAUGCUUGUAGGUAUUCCAUGCAUGGGUUAUUUUAGCUGCACAUGUACCGCUCCAAUUUGAGCUAUUUUCAACUAAUUAAUUAUGUAGUUAUUCUCUUGAUUCUCUGAUCCCUCAAAUAUUAAUUAUUCUUUUUGCACCUUGUUUUUACCAAUAUAGCUACCUUAAACUGGUAUAGGAACUAAUAUGCUUUUUAAUAUUUCUAUACAUAUGCGUUAACUCAGAUAGUUGCCCUCCGUGUGUUGUUUUGUUAGCAGGGGCAAUAUCAAGAUAAACCUCAUAUUUCUAUCCUUUUGACAACAUCAUCUUUAUUAAUCUUAAGGUGCAUACAAGUGGUGAAAAUGUAUAUUUAGCUCAUAAGUUGUGACGGUUGGCUAAGUGUAGUAGAUGGAGUUGGCAGAUAGUUAUUGACGGUUGGCUAAGUGUAGUAGAUGGAGUUGGCAGAUGGUUAUUUGGAGGUGCGCGAAAAGGAUUCCAAGGUUCUCAACACAUAGGCUUUCAACUGGGAAAACAAGAACGGCUGGAAGAAGCAUUGCCGCGGGUUGCUACUUGGUCUUUUAGGUCACAAUUCUGGUGUUGGGAGUUGUUUAUUUAUUAAUGAUCAGCGAGUCUCUUGUUGCUACAACAGAAUGGUCUUGUGAUACAGACGAGAAGUCUCCUUCCAUUAACAAUAACACUGGUUGCACAUGCUCUGUCUUCCUGCAAAAGUGUUGUUGGCAUUUGUGAUUUUUGUAGUUGAUUUUACUGAUAAAAAGUGCAGAUCAUGCAAUUUAUUGAUAUGUUUGCUGGUUGAAAAAUUGAGAUUUGAUUUCUUAA

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

1

LEP:

0.2%

ME_num:

125

MEP:

25.41%

HE_num:

365

HEP:

74.19%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

anther

Tau :

0.63

Avg Expression:

22.31

Tip: OSA-LNC9271704 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN1.325331655875062.43869689338608e-09
2Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min"-1.266195421074056.9419607585333e-05