Chr:
Chr12
Start:
25725099
End:
25726131
Strand:
+
Ref_name:
LOC9271689
Sequence
(XR_001542345.2):
CUUUCGGUACCACACGGUACUGGUACCAUGAGGUACCAGUUUUCAUCCGGCCGUCCAUUGCUAAAGGGGUACGAUGGGCAUGAGGCUGUAUCGCGUGCGCUAUCCAUCUCAGGUUUUGGGCGACCUCAUCCUGAAGCGCCAUAGCCAUCCCAUCCCACGAGGCCACGACCAAGCAGGCAGCAAGGGCUACCCACCCGCUUGACCGGAAGUGCCGCCGCGGCAGGUGCACGGGCUACUGCCGGUGGACGUCGCCGCCGCCGUAGUAGGGGCACGUCGCCAACGCCGCCCUCCGCGGCCGCCGCUGGAGUCGUCGCCGCCGCCGCAGGAGUCAACCGCUGCCGCAGGAGCACGUCGCCCCUGCCGCCGUGGGGACACGUCACCAACGCCGCCCCCCGCGCCCGUCGCGGCCGCUGCUGGAGUCGUCGCCGCCGUUGCAGGUGCUUGUUGCCCCUGCCGCCGACUCCUGUGAUUUCAUCGCUGUCGUAGAGGCAAACUCUUUAUGAGUGAAGAUAUGGCUGACAAUUUCAGGACCCUUGAGGAGGAAGAGGAGUAUCGUACGAUUACUGCUAUGAGAUUCAAGACUGAGGAUGACGGCUUCAAGUUAUAGGCUAUUACAUUUUGCAAUCAUGUCUCAAAGUUGUUUUGUCAUUCCUACAAUUUCAGGAAAGUAGAAGAAGAUGUGUGAGAUGGAUAAGAAGUAGAAGCAGCCCUUUGCUAUGCACUUUACAUAGUUUUGUCAUUCUCUUGGUCGUAAUGAAUACAUUGGACUGUAAUGAAUCUUUGAUGUGCUUUCCUGUAGUAUGAUGGAUGUACUGCUAUUUUGAGUUGUGCUCGCAUGGUUGAAUUUUGAUGUGUUUAACUGUAUGUGAACAUGGUGUAUGCGAAUCUGAAAAUUAUGUGUUUUGGUGCUGGUGCGUUCUGGAAAUGAAGAUAUGUUUGAUGUAUUGCAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
0
LEP:
0.0%
ME_num:
MEP:
14.02%
HE_num:
HEP:
85.77%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
seedling
Tau :
0.60
Avg Expression:
50.64
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | -3.82206460495658 | 4.29504654144791e-30 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -1.11735844818024 | 2.67726136873716e-05 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -1.24445351823266 | 0.00103473088943057 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -1.14784074213231 | 0.000435533521067677 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -1.90557402130147 | 7.23726017795888e-08 |
| 6 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | -1.04720346095859 | 7.46603066596213e-06 |
| 7 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.3608185672679 | 4.5203663013646e-13 |
| 8 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | -4.68302366570775 | 4.56925297292936e-20 |
| 9 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | -1.13333322622489 | 1.84029875300225e-05 |
| 10 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // gibberellic acid (GA) | -2.13104438852315 | 1.39600252842789e-09 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -1.82558406704068 | 7.06351045979494e-10 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -1.12838050526698 | 0.000147765400715543 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -1.34502862926037 | 5.67781341129931e-08 |