Chr:
Chr7
Start:
19192258
End:
19197027
Strand:
-
Ref_name:
LOC9271659
Sequence
(XR_001547205.2):
CUCCCUCCGUAUCAAUCCAACGGCCCACGUCGCUCCCACCUCCCUCACCCCACCGCGCCCUCUCUUCGCCGUCUGACCCGUCAGCCACCAUGCGCCGUCUCCGCCCCCCACGAAGCUUGCGGCUCGGGUCCGUCUCGCCACCGCCGCCAUCGUUCCGCUGCUCAGGGCCGGGCCGACGCACCGCUGUCCCGUGCCGCCACCACCGUAUUCGUCGCUCGGGUCUUUCUCCGCCGUCUCCACCCGCUCGGGACCGCCGCGAAUCGUCGCCCACCUCGCCGUCCCCUAUCUCCACCGCAAGAACACCGUCGGCAGCCUCGGCGGUCUACUCUGCGCCGGUCUCCUCCGCGUCAUCUCCUCGCUCGUGCCGCCUCUGCCAUCCCCUCCGUUCAGCACCCCCCCUCCUCCCCCCGUCUUCCCUUCCGUCCUUCCGUCCAUCCAGCGCGCUGGCGAUCCUCCACCCAGGGCCUGGCGUCCCAUCGAUGAUUUAGGGCGUCGCGGGUCCUCCGUUCAGGGCACCACCGGCCAUCCGUCCAGUGCACGGUCUCCCCAAUCCAGCAUACAGGUGCUACUUCCCCUCAGCGCCAGGAAAUAUUGGAUCAAUUGCAAGGACAUGUGUGCAGCGUGAGCAGUUGGUGUGCAUCUUAUCGGGGUUAAGUGCAAAUGGACACCAUCAAAUUGCCAAUUUGCCAUGAUCUUGGUGCGUGUAUGGAAUCAAGUAGAAUGGUAGUCUCCUGCAAUUGCUCCACGAUGACUGAAUCCACGCGGAAGGCUGUCCAUUUUUGGCAGUUCAGACUUAGAGAGAGGUUAGCAUUGGCCUAUUCUUUGGAUAGGUUUAGGUCAUUUAUGUGUUGAGUAAAAUUUGGCUAAGAAGCUACGGCAUAUCUGUUUUACGAAUGGAAAAAAUGUAGCUAUUUUUUCAUGUGUCCUUGUUGCUUGAUUGGUCAGGCAAGUUGCCAAGUUAUUGCUCCGUAUUGCAAAUUCAUCUUGGUACCAUAUUAACUUUGACAAUCUGCUUUUUUUGGUGUAUCAAUAAAUCAAGUAAAUAAUGAUGCAAUGAACUCUUCUGAUGGACAAGCAACAGAAAAUUUACUUGAUAACUAUAUUGUUUGGACGUAUGUUCUGGCCAAUAAUCUUGAUUCCUUCUUAUAUCAGUCCAUCCUUAUCCUUGACGCCUUAUCAGUACACUGUAAUGCUCAUACUGAUUGUGCUGGCUGAGACCUAGGCGGGGGCCAAGGCCUUCAUUUAGGUCAGUACACACCGCCUCAGGAGGUUUAUUCCUUGUCCGGUACAUAUGGUUGGGAUGUUGGAUCCAUUUCAUUUAUUUCUGCAGGAUGAGAUUGUGAACAAUGGAUUAUCUGUUAUUAGGCUUGGGAUGCUGGUCUGAUGCAAAUUACUGUAGAUUAUUCAAGUCAAAGUUACUAUAGUUUUUUUUUACUGUUGGAGUUCUGUUUCAGUGCCAAAUAUUCGCUGAGCAUGAUGUUGUGUUGCAGUGGUGCCCUAAUUGCGAUUUCAAUGGGAUGUUCUAGACAGAUGUGUGGAGUGGGGUGGAGGAGAAGCGUAGUCGAUGAUGGUGAAACACAGCGUGUUUGAGGAACAAGGUGAUCGACUUGAAGGGCGUUGCCAGCAACCAGGCUGCUUCUUUGAACACCUUGGUUAGUUCACGCAGGAGAAGCAGGAGAAGAGUAUACACCGUGCUUUUGCUCUCAGUAUUGCGAACCAGCUCACAAAUAUAUUCCGUGACCGAGAGAAGUGCCAAUACAAUAGUUUUAGGAAGUUGUGUUCGAUGAUCAGUUCUGAGCAACUGAGCCCCUUGUAGAGUUGUCCCCAUUGCAGUGGAUAAAAUUACCAAGUGCCUAACACACAUUCCAUCAGAAGUACAACUUGGGUUUUGAAAGACAAAAAAAUUGCUAUGUAAUUAACAAUGUAUAAAAAUUCUAUAUUGUUCUUUUUUUCAAUCAAUCUUGAGUAUAUAUCUCAUUCUCAAACAUAUAUCUUUUUCUAUUAUUUGAUUUGAAUUAUCAAAUACUGUCGUAGCGUUAGCACAUGCAUAUUACUUUGCUAUGUAAUUAACAAUGUAUAAAAAUUCUAUAUUGUUCCUUUUUUCAAUCAAA
Sequence
(XR_001547207.2):
GCUCCCUCCGUAUCAAUCCAACGGCCCACGUCGCUCCCACCUCCCUCACCCCACCGCGCCCUCUCUUCGCCGUCUGACCCGUCAGCCACCAUGCGCCGUCUCCGCCCCCCACGAAGCUUGCGGCUCGGGUCCGUCUCGCCACCGCCGCCAUCGUUCCGCUGCUCAGGGCCGGGCCGACGCACCGCUGUCCCGUGCCGCCACCACCGUAUUCGUCGCUCGGGUCUUUCUCCGCCGUCUCCACCCGCUCGGGACCGCCGCGAAUCGUCGCCCACCUCGCCGUCCCCUAUCUCCACCGCAAGAACACCGUCGGCAGCCUCGGCGGUCUACUCUGCGCCGGUCUCCUCCGCGUCAUCUCCUCGCUCGUGCCGCCUCUGCCAUCCCCUCCGUUCAGCACCCCCCCUCCUCCCCCCGUCUUCCCUUCCGUCCUUCCGUCCAUCCAGCGCGCUGGCGAUCCUCCACCCAGGGCCUGGCGUCCCAUCGAUGAUUUAGGGCGUCGCGGGUCCUCCGUUCAGGGCACCACCGGCCAUCCGUCCAGUGCACGGUCUCCCCAAUCCAGCAUACAGGUGCUACUUCCCCUCAGCGCCAGGAAAUAUUGGAUCAAUUGCAAGGACAUGUGUGCAGCGUGAGCAGUUGGUGUGCAUCUUAUCGGGGUUAAGUGCAAAUGGACACCAUCAAAUUGCCAAUUUGCCAUGAUCUUGGUGCGUGUAUGGAAUCAAGUAGAAUGGUAGUCUCCUGCAAUUGCUCCACGAUGACUGAAUCCACGCGGAAGGCUGUCCAUUUUUGGCAGUUCAGACUUAGAGAGAGGUUAGCAUUGGCCUAUUCUUUGGAUAGGUUUAGGUCAUUUAUGUGUUGAGUAAAAUUUGGCUAAGAAGCUACGGCAUAUCUGUUUUACGAAUGGAAAAAAUGUAGCUAUUUUUUCAUGUGUCCUUGUUGCUUGAUUGGUCAGGCAAGUUGCCAAGUUAUUGCUCCGUAUUGCAAAUUCAUCUUGGUACCAUAUUAACUUUGACAAUCUGCUUUUUUUGGUGUAUCAAUAAAUCAAGUAAAUAAUGAUGCAAUGAACUCUUCUGAUGGACAAGCAACAGAAAAUUUACUUGAUAACUAUAUUGUUUGGACGUAUGUUCUGGCCAAUAAUCUUGAUUCCUUCUUAUAUCAGUCCAUCCUUAUCCUUGACGCCUUAUCAGUACACUGUAAUGCUCAUACUGAUUGUGCUGGCUGAGACCUAGGCGGGGGCCAAGGCCUUCAUUUAGGUCAGUACACACCGCCUCAGGAGGUUUAUUCCUUGUCCGGUACAUAUGGUUGGGAUGUUGGAUCCAUUUCAUUUAUUUCUGCAGGAUGAGAUUGUGAACAAUGGAUUAUCUGUUAUUAGGCUUGGGAUGCUGGUCUGAUGCAAAUUACUGUAGAUUAUUCAAGUCAAAGUUACUAUAGUUUUUUUUUACUGUUGGAGUUCUGUUUCAGUGCCAAAUAUUCGCUGAGCAUGAUGUUGUGUUGCAGUGGUGCCCUAAUUGCGAUUUCAAUGGGAUGUUCUAGACAGAUGUGUGGAGUGGGGUGGAGGAGAAGCGUAGUCGAUGAUGGUGAAACACAGCGUGUUUGAGGAACAAGGUGAUCGACUUGAAGGGCGUUGCCAGCAACCAGGCUGCUUCUUUGAACACCUUGGUUAGGUUCAUCGGGAUAUUGGCAGAACCGCCGUUGCUGGUGGCCACGACUGCAACAAUGGUAGCAGGGUGUUCUUGAUCUGGUCAGACGCUAGCUUCCGGAACCACACGAUUGAGCACGUAUUGUCGAGGGUGGCAGCGAUGAGGUUGACAUUUGUAGGGGAGGUGGAGCUGGCACCAGAACCUACCUUAGGAGCACUCCUCCCGAUGCUAGUGGCUGUCGCCCUUCCACUCCUCCUGUAGUCGCCAAGCUGUCGCAUCCGGUUCUACGCCACCUUCAUCCGCAUGUCCUCCUUCCUCAUCUCCGGCAAGUCAACAAUAAUCUCGUGCGCGUAGCUAGCCAGCAUCGUCGGUCUGAUUCGAGAGUUACAUUUUGUUUUGAUUCAAUGUUCUGAUUUGAGUGUUUCAUUUUGUUUUGUUUUCAUGUUUCAUCCAUUGAUUUCUUGGUGUUGCAAUUAGUAUGGAUGUUGUAUCUGACUGAAAUACUUUCGAUCAAGCGAUGAAAUAUUUUUUCCUACUUGAUGAAACAUCUGAAAUUUUUUUGUUGAAACA
Sequence
(XR_001547208.2):
UCCCUCCGUAUCAAUCCAACGGCCCACGUCGCUCCCACCUCCCUCACCCCACCGCGCCCUCUCUUCGCCGUCUGACCCGUCAGCCACCAUGCGCCGUCUCCGCCCCCCACGAAGCUUGCGGCUCGGGUCCGUCUCGCCACCGCCGCCAUCGUUCCGCUGCUCAGGGCCGGGCCGACGCACCGCUGUCCCGUGCCGCCACCACCGUAUUCGUCGCUCGGGUCUUUCUCCGCCGUCUCCACCCGCUCGGGACCGCCGCGAAUCGUCGCCCACCUCGCCGUCCCCUAUCUCCACCGCAAGAACACCGUCGGCAGCCUCGGCGGUCUACUCUGCGCCGGUCUCCUCCGCGUCAUCUCCUCGCUCGUGCCGCCUCUGCCAUCCCCUCCGUUCAGCACCCCCCCUCCUCCCCCCGUCUUCCCUUCCGUCCUUCCGUCCAUCCAGCGCGCUGGCGAUCCUCCACCCAGGGCCUGGCGUCCCAUCGAUGAUUUAGGGCGUCGCGGGUCCUCCGUUCAGGGCACCACCGGCCAUCCGUCCAGUGCACGGUCUCCCCAAUCCAGCAUACAGGUGCUACUUCCCCUCAGCGCCAGGAAAUAUUGGAUCAAUUGCAAGGACAUGUGUGCAGCGUGAGCAGUUGGUGUGCAUCUUAUCGGGGUUAAGUGCAAAUGGACACCAUCAAAUUGCCAAUUUGCCAUGAUCUUGGUGCGUGUAUGGAAUCAAGUAGAAUGGUAGUCUCCUGCAAUUGCUCCACGAUGACUGAAUCCACGCGGAAGGCUGUCCAUUUUUGGCAGUUCAGACUUAGAGAGAGUCCAUCCUUAUCCUUGACGCCUUAUCAGUACACUGUAAUGCUCAUACUGAUUGUGCUGGCUGAGACCUAGGCGGGGGCCAAGGCCUUCAUUUAGGUCAGUACACACCGCCUCAGGAGGUUUAUUCCUUGUCCGGUACAUAUGGUUGGGAUGUUGGAUCCAUUUCAUUUAUUUCUGCAGGAUGAGAUUGUGAACAAUGGAUUAUCUGUUAUUAGGCUUGGGAUGCUGGUCUGAUGCAAAUUACUGUAGAUUAUUCAAGUCAAAGUUACUAUAGUUUUUUUUUACUGUUGGAGUUCUGUUUCAGUGCCAAAUAUUCGCUGAGCAUGAUGUUGUGUUGCAGUGGUGCCCUAAUUGCGAUUUCAAUGGGAUGUUCUAGACAGAUGUGUGGAGUGGGGUGGAGGAGAAGCGUAGUCGAUGAUGGUGAAACACAGCGUGUUUGAGGAACAAGGUGAUCGACUUGAAGGGCGUUGCCAGCAACCAGGCUGCUUCUUUGAACACCUUGGUUAGUUCACGCAGGAGAAGCAGGAGAAGAGUAUACACCGUGCUUUUGCUCUCAGUAUUGCGAACCAGCUCACAAAUAUAUUCCGUGACCGAGAGAAGUGCCAAUACAAUAGUUUUAGGAAGUUGUGUUCGAUGAUCAGUUCUGAGCAACUGAGCCCCUUGUAGAGUUGUCCCCAUUGCAGUGGAUAAAAUUACCAAGUGCCUAACACACAUUCCAUCAGAAGUACAACUUGGGUUUUGAAAGACAAAAAAAUUGCUAUGUAAUUAACAAUGUAUAAAAAUUCUAUAUUGUUCUUUUUUUCAAUCAAUCUUGAGUAUAUAUCUCAUUCUCAAACAUAUAUCUUUUUCUAUUAUUUGAUUUGAAUUAUCAAAUACUGUCGUAGCGUUAGCACAUGCAUAUUACUUUGCUAUGUAAUUAACAAUGUAUAAAAAUUCUAUAUUGUUCCUUUUUUCAAUCAAA
Sequence
(XR_001547209.2):
CCUCCGUAUCAAUCCAACGGCCCACGUCGCUCCCACCUCCCUCACCCCACCGCGCCCUCUCUUCGCCGUCUGACCCGUCAGCCACCAUGCGCCGUCUCCGCCCCCCACGAAGCUUGCGGCUCGGGUCCGUCUCGCCACCGCCGCCAUCGUUCCGCUGCUCAGGGCCGGGCCGACGCACCGCUGUCCCGUGCCGCCACCACCGUAUUCGUCGCUCGGGUCUUUCUCCGCCGUCUCCACCCGCUCGGGACCGCCGCGAAUCGUCGCCCACCUCGCCGUCCCCUAUCUCCACCGCAAGAACACCGUCGGCAGCCUCGGCGGUCUACUCUGCGCCGGUCUCCUCCGCGUCAUCUCCUCGCUCGUGCCGCCUCUGCCAUCCCCUCCGUUCAGCACCCCCCCUCCUCCCCCCGUCUUCCCUUCCGUCCUUCCGUCCAUCCAGCGCGCUGGCGAUCCUCCACCCAGGGCCUGGCGUCCCAUCGAUGAUUUAGGGCGUCGCGGGUCCUCCGUUCAGGGCACCACCGGCCAUCCGUCCAGUGCACGGUCUCCCCAAUCCAGCAUACAGGUGCUACUUCCCCUCAGCGCCAGGAAAUAUUGGAUCAAUUGCAAGGACAUGUGUGCAGCGUGAGCAGUUGGUGUGCAUCUUAUCGGGGUUAAGUCCAUCCUUAUCCUUGACGCCUUAUCAGUACACUGUAAUGCUCAUACUGAUUGUGCUGGCUGAGACCUAGGCGGGGGCCAAGGCCUUCAUUUAGGUCAGUACACACCGCCUCAGGAGGUUUAUUCCUUGUCCGGUACAUAUGGUUGGGAUGUUGGAUCCAUUUCAUUUAUUUCUGCAGGAUGAGAUUGUGAACAAUGGAUUAUCUGUUAUUAGGCUUGGGAUGCUGGUCUGAUGCAAAUUACUGUAGAUUAUUCAAGUCAAAGUUACUAUAGUUUUUUUUUACUGUUGGAGUUCUGUUUCAGUGCCAAAUAUUCGCUGAGCAUGAUGUUGUGUUGCAGUGGUGCCCUAAUUGCGAUUUCAAUGGGAUGUUCUAGACAGAUGUGUGGAGUGGGGUGGAGGAGAAGCGUAGUCGAUGAUGGUGAAACACAGCGUGUUUGAGGAACAAGGUGAUCGACUUGAAGGGCGUUGCCAGCAACCAGGCUGCUUCUUUGAACACCUUGGUUAGUUCACGCAGGAGAAGCAGGAGAAGAGUAUACACCGUGCUUUUGCUCUCAGUAUUGCGAACCAGCUCACAAAUAUAUUCCGUGACCGAGAGAAGUGCCAAUACAAUAGUUUUAGGAAGUUGUGUUCGAUGAUCAGUUCUGAGCAACUGAGCCCCUUGUAGAGUUGUCCCCAUUGCAGUGGAUAAAAUUACCAAGUGCCUAACACACAUUCCAUCAGAAGUACAACUUGGGUUUUGAAAGACAAAAAAAUUGCUAUGUAAUUAACAAUGUAUAAAAAUUCUAUAUUGUUCUUUUUUUCAAUCAAUCUUGAGUAUAUAUCUCAUUCUCAAACAUAUAUCUUUUUCUAUUAUUUGAUUUGAAUUAUCAAAUACUGUCGUAGCGUUAGCACAUGCAUAUUACUUUGCUAUGUAAUUAACAAUGUAUAAAAAUUCUAUAUUGUUCCUUUUUUCAAUCAAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
4.88%
ME_num:
MEP:
66.26%
HE_num:
HEP:
28.66%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.66
Avg Expression:
10.58
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 2.53196720182802 | 3.40876150941051e-06 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 2.40667284469537 | 8.50983491766611e-06 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 2.20177247556748 | 5.19913326157986e-05 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 4.45107796012638 | 6.94349111851956e-21 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 2.87923249358572 | 8.48819704002649e-08 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 3.12440713142103 | 1.08812906097463e-09 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 1.81200348661081 | 0.00216880367234915 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 3.35898240167754 | 2.5982048982037e-13 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 2.99840042082552 | 1.55785851446251e-09 |
| 10 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Watered;Short_Day | -1.45336392464516 | 0.0257686039972092 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 2.09222807053865 | 0.000605677448227635 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 2.10018403725988 | 4.30527108241542e-05 |