Chr:
Chr1
Start:
28823306
End:
28824239
Strand:
-
Ref_name:
LOC9271656
Sequence
(XR_001545385.2):
UCUCUCCCAUUCCACAUGUCCCAUGUUUAUUAUUUUACUUCGAUCUACUCUCCGUCUCUUUCCCACACCCUCCAUAUCCUCUCUGUCUCUAUACCACCGCCACCCGCAGCCCCUCCUACUCCCCUCUCCACCGCUGCGGCAUCGUGGCAUCCUCCCCCUCAACGGUGGUGACUCCGGCGGGCUGCUCUGCUAGCUGGGACAACGAUGGCUCCCAUGGGCAGAUCUGUCGGUGGCGACGGCGGAGACUGUGCAGAUCCAUAGGCUGCGGCGGCGGUGGCUCCCGCGCUCGGAUUUGUCAGUUGCAACGACGAUGGCUCCCGUGGCCGGAUCCAUUGGUUCAGAUGACGACAAGCAUGGGCUCCCAUGAGCGGAUCCGGCGAUGUCUCCCGCAGAUGGAUCCAGUGGCGUCGAUGGCUCUCGCACAUGGAGGCAGCAAUGGCAACCUCGGCGCCCCAAUGAGCGAUGGCGGCAGGCGGAGUUCUCGUCUGCAGGGAUGUUGUUGUUAGAUGGAUUGAUGGGUGAUUUGUGUUUUGUGAUUUGGAGGAUGUUGUUGGAUAAAUCGAUGGUGGUAUGGGGGUGAUAGGGAGCAACUUAAUUUAAGCCGAUGCAUCGAGCCAGCGUUUUUUUUUUCCGCAUUCGUGGAACCUCAAAGGUGCUAGUUUCUAAACUGAACUUUGGUUACUCCUCAUCAGUGCCAUUUGAGGGGUUUCGGUUGGGAAAUCCAAUACCUAUGUGAUGUUCGCAAUCAGCACCUAUUAGGUUUUAGUGUGUGAUAACUGAUAUACAAAAUAAAAAAGAAACAUCUAUUAGGUUUUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
14.63%
ME_num:
MEP:
38.21%
HE_num:
HEP:
46.95%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot_apical_meristem
Tau :
0.75
Avg Expression:
36.67
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 2.41191674944694 | 3.17629252795763e-12 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 2.21100807852506 | 1.42817519572654e-11 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 3.65984081876052 | 1.10936732884411e-41 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 1.71349562258873 | 4.45016204535203e-05 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 3.18764637538279 | 5.52817873699008e-24 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 3.03057687499491 | 3.18895381368766e-20 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 1hA | 1.07388675979664 | 0.021700665528792 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | 1.09834849405259 | 0.0154774141462586 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 2.45513704242825 | 4.43386124574468e-15 |
| 10 | Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 1.81273889814439 | 0.00112692029773607 |
| 11 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 3.03713788762367 | 4.8643331799445e-05 |
| 12 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | 1.66263337425258 | 0.0309284283671782 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 1.71569431186706 | 1.92292711993309e-05 |
| 14 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 3.13514401388069 | 2.72768463500191e-28 |
| 15 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 2.73033483334519 | 3.21019725694158e-20 |
| 16 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | 1.39128375609104 | 0.0212552094434512 |
| 17 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7331 | 2.43206450278166 | 0.00183561567488423 |
| 18 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | 2.62338030521268 | 5.18940328783921e-05 |
| 19 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -1.02234789292747 | 0.0413919513167267 |
| 20 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 2.417021487121 | 4.24874379604916e-12 |
| 21 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 2.5262247297502 | 7.51568136449607e-18 |