RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNC9271604

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr6

Start:

18067499

End:

18068506

Strand:

-

Ref_name:

LOC9271604

Sequence
(XR_001546970.2):

UUGAUAAAUUAAAAUAUAUAGCAUGUGCAGCACUGCUUGAUGCCUAGUCUAGAAUCUUUAAUCGCGGUAAGCUGGGUUAACUACGGUGCGGGCCACGUACCCAAAUUUCUUUCACAGUUGGAUUGACUAGUGUAGUCAAACGAGGGCAUGUGACGAAGGCUAGCUAUUUUAAAUUUUCCGAUUGUCCCUACAUAAAUCAGGCUAUAAUAGCCCCCAGACUACACGCAGGGACUACAAAAUCGGUGCGGCGUGGAGUUCUCAACGGCGCGCGGCGGUGCUGCGGUGCGACGGCUCGACGCAGCGGUGAGGAGGCGAGGAGGAGGUGAACGGCGGCGCCGCGGCCUCCAUCCCCGACCGCCGGGGGCCACCUCCAUCCCCCAACUGACGGGCGCCACCUCCGACCGCCUGGCGCUAGAUCCGUCCUCCACAAGGUCAGGGGACGCGGAUCCGGCCACCGGGCGUCGUCUCCUCCGUCCGCCGGCUGCGUCCCCAACUGACGAGUGCAGAACUGCAGAUUCCCCCGUCGGCUGCUUCCGGGUGCAGAAGGCGAAGAGGGCGGCGUCGAGGAGCAGUAAUAGGGACGAGGUCAUCCGCAAGGAGGAGGAGCAAGGUCGCCUCCAGGCCGAGCUCAAGAAGGUCUAGUGCGCCAAGGAGUUCAAGCCCACCGUGGUAUGAAGAAGCCCUGCCCGGCAAAACCCACAACCAUUUAUUCCCUUCGUUUUUGUUGCUCGUCAGGUGAUUGAUGAAUUGCUUGCUUGCCAUGGCUGUUUUAUGUGUGAUGAAAUGUUCGUGAAGACUUUUCUGUGUGAUGAAAUGUUGUGUGUGAUGAAUGCGAUGGCAACUACCCAGAAGCACUUUUUUUUUGUUUUUUUUUAUCGAAAUCUACAUCAGUGACGGGUGUUGAGCUGUGGUUGUGGCUCUUUUUUC

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

94

LEP:

19.11%

ME_num:

133

MEP:

27.03%

HE_num:

264

HEP:

53.66%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

shoot_apical_meristem

Tau :

0.79

Avg Expression:

27.67

Tip: OSA-LNC9271604 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated-4.903758461578180.0279582122007111