Chr:
Chr4
Start:
13086257
End:
13089040
Strand:
-
Ref_name:
LOC9271560
Sequence
(XR_001545676.2):
AUUAGCUACCUUAUCCUCUCCACCGCCGUCCACGCGCGAUUCCUCCCCUCCACCCGCGCCAUCUCUGCCGCGCACCCCGCCUCUGCCGCAUUCAAUCCACCGUGCAUCCGCACAGCAACGACAAAUCCUCAAAACGAACGCGCCUCUCCCCGCCACCGCGCAUCCAUCCAUCCAUCGGCACCGGAGGUUUCGCCGGAGCUAUCGCAUCUCCCAUUCUUCCCCUCCCCUUUGUAUAUCCUCCUCACUCCAACACGGCGCCGGGCACCGGUCCUCCUCGCGGUCUCCGCCGUCGCUGUCCAUCUUCCACCGGUAAUACCCGCCGCUGCCUCCUCCACUCCGCCCGCAUCGCCGUCCAAUCACCGCGCUGUCACGACACGAUUCGACCUCAACCACGGCGCUGCCUCCUGCACUCCUGCCACUCAGAUGUCACCCACGUGAUCCGGCCCUCAAGCCCGAUGUGGCCAGCUGAUCUUAUCCCCUCCCCCAUCAGUGAAGUCUAUUUUCAGGAUUAUUAGGGACAAAAGGAUCAUUGAUUCUCAUGUCCAAAAGGUGUUCGAUGAAAUGCUGCUAAUAGAUGGUUCGUUGGACAUGAUUUGUUCCUUGACAUGAUCAAUGUGUUGCCCAAGCUCCAGAUGACACGGUAUAAUGCUUCUGCUCUGGUCCUGAGGCCUGACUAUUGCUGCCUAUGCUGAGUUCUAAUAAAAAAAUAUAAGUGUUUUGGAAGACUGCAAGGACCAUGGAUGCCAUUCGUUGUUGGGGCUUAUCCCAUAGUAAAAAUGUAAACAAGAGCUUUGGCAAGGGCAGGUUGUAUUCCAAAGUAGGUCUUUGUGCUGCCCAGUUGUAUGUUUCAGCGUCAUAUCGCUCUUAUCUGGUGAUUUCUGGCCCAUGACAAAGAAGAUAGAGGGGAGGGGCAAAAGAGAAAAGCCCGUGGAAAAUGGGCUGGCGCCUCAUUGAGCCAGGUUGACGCAGUACCAUGCCUUAUAAUUGAUAAUGUACGCACUUUUGUGUUUUUUUUCAAUCAUUGUCUCAAAUGAACUAGCAGCUUCGAUACGCCAGUUCACACUAUUGUAAAUUUGUAAUGCGUAUCGAAGGUAGUGUGAUUCACCCGAAAGGAUUUUAUAGGAAUCAUCCAAAUUGACAUGUUACUAUGGUGUAUGAAACUCUAUUUUUAUCUCGAGAUUUUGUUGGAGUGUACUGCCUUUCUAGGUCA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
10.37%
ME_num:
MEP:
4.67%
HE_num:
HEP:
84.76%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
flag_leaf
Tau :
0.75
Avg Expression:
122.31
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | -1.47659025236902 | 4.84465750956418e-07 |
| 2 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 14h | -4.36419012832169 | 0.0170418290000729 |
| 3 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h | -4.45066652932773 | 0.00335951305171491 |
| 4 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.84912195143874 | 2.3484287205119e-09 |
| 5 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | -1.51126861470297 | 9.61884641176711e-22 |
| 6 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | -1.2088610380156 | 1.54296247778114e-07 |
| 7 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | -1.08784789657596 | 0.00466584806649781 |
| 8 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -1.49853993665995 | 1.33343178669519e-13 |
| 9 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | -1.13631185622848 | 4.451680372383e-08 |
| 10 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | -2.12129905013892 | 1.52150682695991e-20 |
| 11 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | -1.22764829609706 | 7.91882561477308e-06 |
| 12 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | -2.12137999569438 | 1.87893137658721e-20 |
| 13 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | -2.12146644856907 | 1.55477883222417e-20 |
| 14 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -2.02725503907358 | 1.15945920474685e-53 |
| 15 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | -1.12777057588722 | 0.00568470570091147 |
| 16 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -1.50535010768593 | 6.59891190188014e-61 |
| 17 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -1.04023094526449 | 1.11324224494872e-09 |