Chr:
Chr6
Start:
13007774
End:
13010656
Strand:
-
Ref_name:
LOC9271528
Sequence
(XR_001546325.2):
GUCAAGUCGAAACCCAUCCGUUCCCAACCUUAUCCUCAUUCCUCCUCAUCCAGUCAUCCCCAACCUCUCGCAUCGGCUUCUUCGUGCAGUGCGGCCACAGCGUCAUCAGGCAGCGGCGCCGCCACCGUAGACGGCGGGGUCUACCGUUGCGGGCGGCCGUAUUUGGCCGUUCAGCCAACACCGCGAGAAAACAGUCGAUGCCGGUUAGGCCUUGACCUCGCUGGUGGCAACGGCACCACGACAAGGUACAACCGUUGUCAAAGAGGAUCCGAGCUCGGCGGCGGCGACACGGCGGCGGCGAUGGCGGUGGCGGCGUCAACGUCACAAGGAGAUACGCCUAGCGACGGUUAGGGCCCUGAGCUUGCCGGCGGCGGUGGCACUGCGAGGGAGCGGACUAAAACUUGAGGCGCCGUUGAUGGAGAUGGCCCUGCGCUCGCCGACGAAGUCAAAAGCUCAACAGUGAAUGGAGUGGGACCGGGACGAGGACGUGGGCGGAGAUGGUUGGCCUUAGAGGGAUGGUUGAAGCUAGCCUUGGUUUGGUUGAGCGGGGUUAGCGUGGUGGCGGGGUAAGCAAUAGGGAUAGAGGGGAGCAGCGUGGCAAGGCUGCGGGAGGAGAAAAUAACUCACCUAGUUGCUGGGCCAAGCUUGCCGGAGGGAAGGCAGAUAUGGGGCUCACUUGCGUCGAGUUUGUUGGCAUUUUGUCACAGAUGAGAAAUUAAGAAGUUGGUGAAGAGAGAGGAAGGCCGCUAAUAUGGGGGCGGUGGAAGAGGCUUGGCGGGGGUGCUCCUCGCAUCGGAUACAUCACCGUCUCGAUUAAGUCGCAACUGGAGGACAACGGGAAGAGGAUAAUGUGGAUCGGGUGCAAGCUAAUUGGUUUGCUCGGAUUAGCUCGUGUACUAUAUCAUAGGUGCCACAAGAGAAAUCUUCCCUGCACACGUCAAACAAGCUAUGUGGCCAUUAUAAUAGUAAUUAAAGUGCUACCAUGUUUCAUAAUUGGUGCUUAAAUUGUCUAUAAUGCUUAGAUGGCUAAAUAAGAAAAGGCUACCAUACGAAUGUGUAUAGUCGCUAAUGCUUAAAUGGCUAGAUGAGAAAAGGCUCCUUUGUGUUUUUCGAUUAGCAUCAGUGAUAACGUGGUUUAUAUUUUGGGAGUAGCUAUACAACAUUCAGACAGCUUUUUGGAUGAAAAACUUUCAGAUGUAACAUUGUAGUGUAGUUACAUUGUAACUACUAUGCAACUGUGAUAUAAUUGAUAGUAACUUGGGUGUAACAGUCAAAAAAAAAAAAGUGCGAUGGAUCAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
21.95%
ME_num:
MEP:
23.98%
HE_num:
HEP:
53.86%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.73
Avg Expression:
52.14
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 2.08883226796328 | 5.45333235992815e-05 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 1.64318786592807 | 0.00343665557081977 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 3.42451366997272 | 4.32859706114006e-13 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 1.66816819875861 | 0.0165991400479931 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 3.69082127484593 | 2.27270387377387e-12 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 2.9688594191019 | 7.56504093043191e-09 |
| 7 | Azucena // root // control--/--Azucena // root // Al | -1.26582961076866 | 0.0269559827270924 |
| 8 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | -1.41604816714027 | 6.85120340560939e-05 |
| 9 | Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.41329103821231 | 3.08806404695221e-05 |
| 10 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -2.77342585301368 | 6.08062702664959e-36 |
| 11 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | -1.23400964728362 | 2.25344638947607e-08 |
| 12 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | -1.01494371897978 | 9.06567281302196e-09 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 2.3830910497237 | 3.47177946638428e-07 |
| 14 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 1.93335045913819 | 0.00011066800228835 |
| 15 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -1.18609671882019 | 5.24309152375275e-09 |
| 16 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | -1.05968273063481 | 1.09570281636304e-08 |
| 17 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | -1.06417867251116 | 0.000102907584581971 |
| 18 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | -1.06426384507305 | 0.00010783707262803 |
| 19 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | -1.06434931122898 | 0.000103382635195093 |
| 20 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | -1.17419225200892 | 0.0020644761978152 |
| 21 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 1.41108786259653 | 1.34412936461449e-111 |
| 22 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 1.3721090960276 | 0.0335354511785908 |