Chr:
Chr4
Start:
23125231
End:
23126402
Strand:
-
Ref_name:
LOC9271504
Sequence
(XR_001545108.2):
AGUGGACUAUUGGUUCAGCUCGUUAAACUCAUGAAUACUCCAUAACUCGUAACCUAGCUCACUACUAGAAUUCAACGGGUUCCCUAGAGUUAAAAUUGUUCCCUAGAGUUGUUAAAGCCAUCCAAGGGAAACCAAAAGUAUCCCUAGGGAGCAAAUUGAUAACUCUAAGGGAAAGAAGUAUUCCUAGGGAACUUUGGCUGAAAUGACACGUAGCUACUCCACAUCAGCAUGGUGGUCUGAUUACUUCCAAUAUUUUUUUUCAAUUUUUUUCCUUGCUGCGACCAAGGAACGCGCCCUCGACAUACAAAAUUUCUGCCCAAUAAAUGUUGGGCCCACCUUAUCUUCUCCACAGCUCAAGCAAACCACAUCCUCUCGUUUUUCUUCACCCCAACGGCCGGCCGGCGUGCGGCGGCCGGCCGGCACGGCGGCCCCUGCCCUUUCCUUGACCAAACCUCGAGCUCUAGCAACCGGUCGCCAGCAAGCACCCGACAGCUGCCGCUCUCGACAAGCUCGACGGAGCCUCCUCUCUCACCACACGCCGUUGUCUCCGUCUUGCAUAAGUUGUUUCGAUCCAAUUUUCUCAGCUCCUUUCCUCUCCUUUUUUUUCUUCGUAGCGUGCAGCACAAGAGCGCACUCCAGCAAGCAGCGAGCACCACAAGGUUGCUGAUGCUCCAGCCUCCAUCAUGAUGCUGACCAGCAAUGGAAGUACAAAUCCAAGCAAGGGCUGGAAGCAUUGGAGAACAAACAAGAUUAGUUCCACUUCAGUUCUUUGCGGAUGCAGUUUUUCAAGUUUCCACUGUUGUUGCAGAAGCACGCUAGUAUCAAGUGGUUUAGAUUCGUUUUCAAGAACAUGUGUUGUCUUUUAUGUUUUUAUCGUUUCGAUCUGAGCGAUGAUAGCAUCAGCUCAUCAGCACAUCUGAAGUGUGUAUCAUAUGUUUGUGAGAGGAAUUUUUUGUCAACUUUUCAGCUCCACUUUGUACUACAAAAGUAUAUGUAAACUGAAGAAUCAAUGUAAUUGAGUAUUUUUCUAUUGAUAAUAGAAUGGCAUUUUUAUUUCAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
0
LEP:
0.0%
ME_num:
MEP:
9.76%
HE_num:
HEP:
90.04%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.62
Avg Expression:
65.03
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 2.60111449546901 | 6.08368689144701e-29 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 3.08968451631465 | 3.19838470881606e-45 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 3.00573528389089 | 2.42152037389366e-47 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 1.03011030977774 | 0.00365844480194845 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 2.86335330527178 | 2.85321922394042e-35 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 1.50795531829562 | 8.12922834736946e-07 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 1.45487533860539 | 1.07885655732049e-08 |
| 8 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | -1.07479486935996 | 0.0020092265772569 |
| 9 | Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.35727974905344 | 0.000569096141121432 |
| 10 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -2.71106313994959 | 3.48885658275522e-17 |
| 11 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | -1.03076873521218 | 7.21360623512855e-08 |
| 12 | 9311 // leaf // control--/--9311 // leaf // salt | 1.27980299756742 | 6.36677955822297e-07 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 1.68956360714679 | 2.18034653316711e-11 |
| 14 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 2.26408772195503 | 9.72425367534677e-26 |
| 15 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | -1.23526759460833 | 6.01382622587887e-05 |
| 16 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | -1.23536293136374 | 5.92577765275821e-05 |
| 17 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | -1.23545692026209 | 6.06279992875049e-05 |
| 18 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | -1.0203130763491 | 0.0130106865654223 |
| 19 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -1.02082962270676 | 3.73313359513674e-05 |
| 20 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 1.93963710160712 | 4.66702213458389e-14 |
| 21 | 9L136 // leaf // control--/--9L136 // leaf // salt | 1.46183107271637 | 5.73168002883494e-14 |
| 22 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 1.45558988532824 | 4.37217329725889e-10 |