Chr:
Chr1
Start:
4297755
End:
4302902
Strand:
-
Ref_name:
LOC9271473
Sequence
(XR_001544794.2):
AGAAAAUAUGCGUAGGUUUUCAUUUAAAAGUACUGCUCAUAUCGUAUACGAAAUUUACAAACGUACUAAAAUACAAAAUUGAUACUCAAAAAAUUUUAAAAGUUUGGUCAAGUUCGAGCCUCCCUCUAUGCUAUCGUCGAACUUUAUCGCACCCUCCACACCAUUCCAUCGCUAUUCUGUUAGGAUCUAACCGUUUGAUAGCUCUGACAUGUGGGCUCGGGUAAGAAAAAUAUCGCUAUUGCCCUUUCAGUUACGGGCCCCACCUGUCAUUCUCUCACCUCUCUAUUUCCCCUCUUCUCCUCUUCAUCUUUCUCUCGUGAGCAGCGGUGGCCGGCAGCCGGUGACGGGCGACCCAUGGCGGCGGCGACCGAGGAGGCACCCUCAACCUCAACCUCACCAUCGGCCCCUUCCCCCGAAGCCCCAGCCCUCGCGGCCGCCCGCGCGCGCGUCAUCGUCGUCUCGACGCGCCACCUCCUAGCACCAUCCAAACUGGCGGCGGCGAGGCCCACACGCCGGGGAGAUGGGAGGGAGGCUCGGAGGGAGAGGGACGUCGCGCUCCAUCGAGUCACAUGGCGGAGGGAAGGGGUGCGAUAUAGGUUGUCGUCGUCGCACAGCACCACCCCGUCGUCGUCGUCGCAGCGCCGCCCUCGUCGUCGUCGUCGCAGCGCUGCCCCCGUCGUCGUCGUCGCAACGCCGUUCCCAUCUUCGUCGUCAUCGCAACUGCCGCCGCCGCAACAGCCGCGGCGUCAAGGUGGCAAGGCAGCCAAGCGGCGCCGGUGGCCAGCCGAGGCGGUGCUCGGUGGCGCGGCAGCAAGGCGGCCAAGCGGCGCUCGGCCUUCUCCUCGCUGGCUCGCUCCUGCGCCGCAUCGCCGUGCUCGACCCUGCCACCGCCGCCGUCGACGUAGGUGACGCCGCACCCUCGCCACGCCCAUCGGAAUCUGGCAAGCUCCACGCCGGCGACCUUGCCACCGCCGCCGUCGACGCAGGUGAGUAGCGGGGUCGUCGUCGGGGAUGCGCUGGAUCCUCGCCGCCAUGGGGGCCGCCGAGGAGGCCGCGGCGUCCGCGGCCGCCACCGCCGCCGUCCAGUGCUCUUCGUCGGUGGUGCCCUCCGUCCCGGCUCUCUCUCUCUUCUCUCUCAACCCUAAGGACAACAAAGUCAUUUGACUGCGCUGUUUGACACUGUUAGGACUAAAAACAGAUGGAAUAGUGUGGAGGGCGCGAUAAAGUUCGACGAUGGUAUAAAGGGAGGCUUGAACUUUUUAGUGACAGAAGGCAGGGGUCAUCUUUUUUAACGCGCACAGGCAAAAGCAAAAGUAAAAGCAGCUGGACAGCUGGUUGCGUGUGGCUCGCUGGGUGUGUGUGUCCUGCAGUAAUGUGUGCCUGUGAGGUGCAACUACUGUACAAGCUAGGGGUAGCUAGCUAGCGCCUAGGGUUAGCGCCCAGAGCCCCAGAGGAAGGCAUAGGCUAUCGAUCUCUCCCUCUCUGCCCUGCCUUUCUUGUUCGCUCGCUUAGAGAGAGAAGCAGCAUGGAGAGCGGAGGGCCGGGCGGGUAGCAGCUCCCCUCAGUUCCCCUCAGUUCUUCUUCCUCCCUCAGUUCUUUCUCCACCUCAGUGACUCCCACAGAGACCAUGAUUCACUCCGGCGGCCGCGGCCGCCGCCGCCGCCGUCGCCGUCGCCGCGGGAGCAAAGGGCCGUACGAGCGCGGCGGCGGCGGCGACGGGGACCAAGCUGCCAAGGGCUGCAUGGACGCGGCGGCGACGGGCGCAAAGACAGUUCUCCGGCGACUCUACGCUGUGCAAGAAGAAGGACAACACGCUGGACGAGGUGAAGGAGGUCGUCCAUGUGAAGCAAGAUGCUCCUCCACCAUCUUCUUUCUUGCCCAAUUCCUCGGGGUUACAAUCAUUAUUUGUCAAGGCAUGUGGGGUUAAUAUAUCUGUACAAGUGGAUUUAUCUAACACAAAAGUUGAUUAUCUAAUCAACUCUGCUUGUCAAAAGAUGAGAGUAAAUGUUAAGGACACAUAUGCAGUAUUAUGUGGAAAGAUUUUAGAGUACAAUAAGUCAAUAAGUCACUGUCAGACUAUCCUUUAUAUCGGAAUUCAACGAUUGAAAUCCGUUUUCGAGGAAGAGCCGGCCAGCCCAUGACAUUUGAUGAGAAGUUUGAUGAUAUCCAUGCGAACACAUGGUUCUACACGGUUGAUUUAGUACCUGCACUUCAACGUCAAACUCGUACAAAUCCGCCGGUUCUACCAUGGUUAUCAGUAAGAUACUUCUCGGACUUUGCAUCAUACAACAUCCAAAAGGUUUUGAACCACAUCACUGCAAUGCACUGGGAAAACCUGAGCUACAAUGGCGCUUUCAAUAGCGACAACAUCAUAUUUCACAAUGGUGCUGUUACCAUCCAGGGUGUUCUUACAGUACAAUUUAAUGGUGUGACAUGUGCAAAAGAUUUUGCAAAGCUUUAUUCCAUAUUCAUUGCAAAAUUUACACCACAUGGUAUUCCAUUGUACUUUAAUGAUCUGCUUGAGUACUUGAGGAAUUGUCCAAAUGGAGAGAAUUCCAAUGAUGAGGCUAUUGUGGCAUUUAUUAUCAAUCACCCCUGUCUCCAAUCUUAUUUAGAGAGGAUGUCACAAUUAGAGCAUCUUGAUAACAUUUAUCCUAGACAUCCUGGACAUUCUACAACAAAUAUAUCUGCUCUGGGAACAUUUUCUUGGCAAGACAAAGUCGUCAGGUCCCAGAAUUACGUCGUGCUUUUAUUUAUGGUCCCAAUGGAAGAGCAUAUUUGGUAAAUGGAGUGUGGCAUAAUCUAAAUCCUUUGUAUACUAAUGAUCCAAAAGGAUGCCUUCACUUUGCAAACAACUUCUUGAAACAUGCACAAAACAGAUUCAUGUUACAUGAAGUUGAGGCUGCAUUUUCAAAUUGCCUGGAGGAAUAUCUACCCCAUGUAUUAAAAGCGAUAGCGCGCCUUGCUCAACAUAACCCCCAAGGCCGGCAGUAUCUAGUUGACGUGCUUUCGAACAAAAACGCAGAUAAAUCGUCAGGAAACUAGGUUGGAGAGAUUUCGUGACAGGAAACUAGAUUCAUAGAUGAAGCAGCAAUCUGGAGGUGCUGCGAAUGAGUCGUAUCUUGCUCGCCUCAUGGAGGCAUGUAUCUUCUUUGUUUCUUUGGACCGGUGUUGUAUGUGUUGCAGCAUGGCGGGAUGGCGGCAUGCUGGAAUACAAAGAAAAACAACCAUAGUUGUUGUACCGUAUGAACAUCACUGCAUUCGCUCUUAAUUUAGUAGUACUAGUAACUUGUUGUGCUGCAGGAGUACUACUAUUAUCAUUACUACAUGUUUGUAUGCCUGUCU
Sequence
(XR_001544796.2):
AAGAAAAUAUGCGUAGGUUUUCAUUUAAAAGUACUGCUCAUAUCGUAUACGAAAUUUACAAACGUACUAAAAUACAAAAUUGAUACUCAAAAAAUUUUAAAAGUUUGGUCAAGUUCGAGCCUCCCUCUAUGCUAUCGUCGAACUUUAUCGCACCCUCCACACCAUUCCAUCGCUAUUCUGUUAGGAUCUAACCGUUUGAUAGCUCUGACAUGUGGGCUCGGGUAAGAAAAAUAUCGCUAUUGCCCUUUCAGUUACGGGCCCCACCUGUCAUUCUCUCACCUCUCUAUUUCCCCUCUUCUCCUCUUCAUCUUUCUCUCGUGAGCAGCGGUGGCCGGCAGCCGGUGACGGGCGACCCAUGGCGGCGGCGACCGAGGAGGCACCCUCAACCUCAACCUCACCAUCGGCCCCUUCCCCCGAAGCCCCAGCCCUCGCGGCCGCCCGCGCGCGCGUCAUCGUCGUCUCGACGCGCCACCUCCUAGCACCAUCCAAACUGGCGGCGGCGAGGCCCACACGCCGGGGAGAUGGGAGGGAGGCUCGGAGGGAGAGGGACGUCGCGCUCCAUCGAGUCACAUGGCGGAGGGAAGGGGUGCGAUAUAGGUUGUCGUCGUCGCACAGCACCACCCCGUCGUCGUCGUCGCAGCGCCGCCCUCGUCGUCGUCGUCGCAGCGCUGCCCCCGUCGUCGUCGUCGCAACGCCGUUCCCAUCUUCGUCGUCAUCGCAACUGCCGCCGCCGCAACAGCCGCGGCGUCAAGGUGGCAAGGCAGCCAAGCGGCGCCGGUGGCCAGCCGAGGCGGUGCUCGGUGGCGCGGCAGCAAGGCGGCCAAGCGGCGCUCGGCCUUCUCCUCGCUGGCUCGCUCCUGCGCCGCAUCGCCGUGCUCGACCCUGCCACCGCCGCCGUCGACGUAGGUGACGCCGCACCCUCGCCACGCCCAUCGGAAUCUGGCAAGCUCCACGCCGGCGACCUUGCCACCGCCGCCGUCGACGCAGGUGAGUAGCGGGGUCGUCGUCGGGGAUGCGCUGGAUCCUCGCCGCCAUGGGGGCCGCCGAGGAGGCCGCGGCGUCCGCGGCCGCCACCGCCGCCGUCCAGUGCUCUUCGUCGGACUAAAAACAGAUGGAAUAGUGUGGAGGGCGCGAUAAAGUUCGACGAUGGUAUAAAGGGAGGCUUGAACUUUUUAGUGACAGAAGGCAGGGGUCAUCUUUUUUAACGCGCACAGGCAAAAGCAAAAGUAAAAGCAGCUGGACAGCUGGUUGCGUGUGGCUCGCUGGGUGUGUGUGUCCUGCAGUAAUGUGUGCCUGUGAGGUGCAACUACUGUACAAGCUAGGGGUAGCUAGCUAGCGCCUAGGGUUAGCGCCCAGAGCCCCAGAGGAAGGCAUAGGCUAUCGAUCUCUCCCUCUCUGCCCUGCCUUUCUUGUUCGCUCGCUUAGAGAGAGAAGCAGCAUGGAGAGCGGAGGGCCGGGCGGGUAGCAGCUCCCCUCAGUUCCCCUCAGUUCUUCUUCCUCCCUCAGUUCUUUCUCCACCUCAGUGACUCCCACAGAGACCAUGAUUCACUCCGGCGGCCGCGGCCGCCGCCGCCGCCGUCGCCGUCGCCGCGGGAGCAAAGGGCCGUACGAGCGCGGCGGCGGCGGCGACGGGGACCAAGCUGCCAAGGGCUGCAUGGACGCGGCGGCGACGGGCGCAAAGACAGUUCUCCGGCGACUCUACGCUGUGCAAGAAGAAGGACAACACGCUGGACGAGGUGAAGGAGGUCGUCCAUGUGAAGCAAGAUGCUCCUCCACCAUCUUCUUUCUUGCCCAAUUCCUCGGGGUUACAAUCAUUAUUUGUCAAGGCAUGUGGGGUUAAUAUAUCUGUACAAGUGGAUUUAUCUAACACAAAAGUUGAUUAUCUAAUCAACUCUGCUUGUCAAAAGAUGAGAGUAAAUGUUAAGGACACAUAUGCAGUAUUAUGUGGAAAGAUUUUAGAGUACAAUAAGUCAAUAAGUCACUGUCAGACUAUCCUUUAUAUCGGAAUUCAACGAUUGAAAUCCGUUUUCGAGGAAGAGCCGGCCAGCCCAUGACAUUUGAUGAGAAGUUUGAUGAUAUCCAUGCGAACACAUGGUUCUACACGGUUGAUUUAGUACCUGCACUUCAACGUCAAACUCGUACAAAUCCGCCGGUUCUACCAUGGUUAUCAGUAAGAUACUUCUCGGACUUUGCAUCAUACAACAUCCAAAAGGUUUUGAACCACAUCACUGCAAUGCACUGGGAAAACCUGAGCUACAAUGGCGCUUUCAAUAGCGACAACAUCAUAUUUCACAAUGGUGCUGUUACCAUCCAGGGUGUUCUUACAGUACAAUUUAAUGGUGUGACAUGUGCAAAAGAUUUUGCAAAGCUUUAUUCCAUAUUCAUUGCAAAAUUUACACCACAUGGUAUUCCAUUGUACUUUAAUGAUCUGCUUGAGUACUUGAGGAAUUGUCCAAAUGGAGAGAAUUCCAAUGAUGAGGCUAUUGUGGCAUUUAUUAUCAAUCACCCCUGUCUCCAAUCUUAUUUAGAGAGGAUGUCACAAUUAGAGCAUCUUGAUAACAUUUAUCCUAGACAUCCUGGACAUUCUACAACAAAUAUAUCUGCUCUGGGAACAUUUUCUUGGCAAGACAAAGUCGUCAGGUCCCAGAAUUACGUCGUGCUUUUAUUUAUGGUCCCAAUGGAAGAGCAUAUUUGGUAAAUGGAGUGUGGCAUAAUCUAAAUCCUUUGUAUACUAAUGAUCCAAAAGGAUGCCUUCACUUUGCAAACAACUUCUUGAAACAUGCACAAAACAGAUUCAUGUUACAUGAAGUUGAGGCUGCAUUUUCAAAUUGCCUGGAGGAAUAUCUACCCCAUGUAUUAAAAGCGAUAGCGCGCCUUGCUCAACAUAACCCCCAAGGCCGGCAGUAUCUAGUUGACGUGCUUUCGAACAAAAACGCAGAUAAAUCGUCAGGAAACUAGGUUGGAGAGAUUUCGUGACAGGAAACUAGAUUCAUAGAUGAAGCAGCAAUCUGGAGGUGCUGCGAAUGAGUCGUAUCUUGCUCGCCUCAUGGAGGCAUGUAUCUUCUUUGUUUCUUUGGACCGGUGUUGUAUGUGUUGCAGCAUGGCGGGAUGGCGGCAUGCUGGAAUACAAAGAAAAACAACCAUAGUUGUUGUACCGUAUGAACAUCACUGCAUUCGCUCUUAAUUUAGUAGUACUAGUAACUUGUUGUGCUGCAGGAGUACUACUAUUAUCAUUACUACAUGUUUGUAUGCCUGUCU
Sequence
(XR_001544797.2):
AAGAAAAUAUGCGUAGGUUUUCAUUUAAAAGUACUGCUCAUAUCGUAUACGAAAUUUACAAACGUACUAAAAUACAAAAUUGAUACUCAAAAAAUUUUAAAAGUUUGGUCAAGUUCGAGCCUCCCUCUAUGCUAUCGUCGAACUUUAUCGCACCCUCCACACCAUUCCAUCGCUAUUCUGUUAGGAUCUAACCGUUUGAUAGCUCUGACAUGUGGGCUCGGGUAAGAAAAAUAUCGCUAUUGCCCUUUCAGUUACGGGCCCCACCUGUCAUUCUCUCACCUCUCUAUUUCCCCUCUUCUCCUCUUCAUCUUUCUCUCGUGAGCAGCGGUGGCCGGCAGCCGGUGACGGGCGACCCAUGGCGGCGGCGACCGAGGAGGCACCCUCAACCUCAACCUCACCAUCGGCCCCUUCCCCCGAAGCCCCAGCCCUCGCGGCCGCCCGCGCGCGCGUCAUCGUCGUCUCGACGCGCCACCUCCUAGCACCAUCCAAACUGGCGGCGGCGAGGCCCACACGCCGGGGAGAUGGGAGGGAGGCUCGGAGGGAGAGGGACGUCGCGCUCCAUCGAGUCACAUGGCGGAGGGAAGGGGUGCGAUAUAGGUUGUCGUCGUCGCACAGCACCACCCCGUCGUCGUCGUCGCAGCGCCGCCCUCGUCGUCGUCGUCGCAGCGCUGCCCCCGUCGUCGUCGUCGCAACGCCGUUCCCAUCUUCGUCGUCAUCGCAACUGCCGCCGCCGCAACAGCCGCGGCGUCAAGGUGGCAAGGCAGCCAAGCGGCGCCGGUGGCCAGCCGAGGCGGUGCUCGGUGGCGCGGCAGCAAGGCGGCCAAGCGGCGCUCGGCCUUCUCCUCGCUGGCUCGCUCCUGCGCCGCAUCGCCGUGCUCGACCCUGCCACCGCCGCCGUCGACGUAGGUGACGCCGCACCCUCGCCACGCCCAUCGGAAUCUGGCAAGCUCCACGCCGGCGACCUUGCCACCGCCGCCGUCGACGCAGGACUAAAAACAGAUGGAAUAGUGUGGAGGGCGCGAUAAAGUUCGACGAUGGUAUAAAGGGAGGCUUGAACUUUUUAGUGACAGAAGGCAGGGGUCAUCUUUUUUAACGCGCACAGGCAAAAGCAAAAGUAAAAGCAGCUGGACAGCUGGUUGCGUGUGGCUCGCUGGGUGUGUGUGUCCUGCAGUAAUGUGUGCCUGUGAGGUGCAACUACUGUACAAGCUAGGGGUAGCUAGCUAGCGCCUAGGGUUAGCGCCCAGAGCCCCAGAGGAAGGCAUAGGCUAUCGAUCUCUCCCUCUCUGCCCUGCCUUUCUUGUUCGCUCGCUUAGAGAGAGAAGCAGCAUGGAGAGCGGAGGGCCGGGCGGGUAGCAGCUCCCCUCAGUUCCCCUCAGUUCUUCUUCCUCCCUCAGUUCUUUCUCCACCUCAGUGACUCCCACAGAGACCAUGAUUCACUCCGGCGGCCGCGGCCGCCGCCGCCGCCGUCGCCGUCGCCGCGGGAGCAAAGGGCCGUACGAGCGCGGCGGCGGCGGCGACGGGGACCAAGCUGCCAAGGGCUGCAUGGACGCGGCGGCGACGGGCGCAAAGACAGUUCUCCGGCGACUCUACGCUGUGCAAGAAGAAGGACAACACGCUGGACGAGGUGAAGGAGGUCGUCCAUGUGAAGCAAGAUGCUCCUCCACCAUCUUCUUUCUUGCCCAAUUCCUCGGGGUUACAAUCAUUAUUUGUCAAGGCAUGUGGGGUUAAUAUAUCUGUACAAGUGGAUUUAUCUAACACAAAAGUUGAUUAUCUAAUCAACUCUGCUUGUCAAAAGAUGAGAGUAAAUGUUAAGGACACAUAUGCAGUAUUAUGUGGAAAGAUUUUAGAGUACAAUAAGUCAAUAAGUCACUGUCAGACUAUCCUUUAUAUCGGAAUUCAACGAUUGAAAUCCGUUUUCGAGGAAGAGCCGGCCAGCCCAUGACAUUUGAUGAGAAGUUUGAUGAUAUCCAUGCGAACACAUGGUUCUACACGGUUGAUUUAGUACCUGCACUUCAACGUCAAACUCGUACAAAUCCGCCGGUUCUACCAUGGUUAUCAGUAAGAUACUUCUCGGACUUUGCAUCAUACAACAUCCAAAAGGUUUUGAACCACAUCACUGCAAUGCACUGGGAAAACCUGAGCUACAAUGGCGCUUUCAAUAGCGACAACAUCAUAUUUCACAAUGGUGCUGUUACCAUCCAGGGUGUUCUUACAGUACAAUUUAAUGGUGUGACAUGUGCAAAAGAUUUUGCAAAGCUUUAUUCCAUAUUCAUUGCAAAAUUUACACCACAUGGUAUUCCAUUGUACUUUAAUGAUCUGCUUGAGUACUUGAGGAAUUGUCCAAAUGGAGAGAAUUCCAAUGAUGAGGCUAUUGUGGCAUUUAUUAUCAAUCACCCCUGUCUCCAAUCUUAUUUAGAGAGGAUGUCACAAUUAGAGCAUCUUGAUAACAUUUAUCCUAGACAUCCUGGACAUUCUACAACAAAUAUAUCUGCUCUGGGAACAUUUUCUUGGCAAGACAAAGUCGUCAGGUCCCAGAAUUACGUCGUGCUUUUAUUUAUGGUCCCAAUGGAAGAGCAUAUUUGGUAAAUGGAGUGUGGCAUAAUCUAAAUCCUUUGUAUACUAAUGAUCCAAAAGGAUGCCUUCACUUUGCAAACAACUUCUUGAAACAUGCACAAAACAGAUUCAUGUUACAUGAAGUUGAGGCUGCAUUUUCAAAUUGCCUGGAGGAAUAUCUACCCCAUGUAUUAAAAGCGAUAGCGCGCCUUGCUCAACAUAACCCCCAAGGCCGGCAGUAUCUAGUUGACGUGCUUUCGAACAAAAACGCAGAUAAAUCGUCAGGAAACUAGGUUGGAGAGAUUUCGUGACAGGAAACUAGAUUCAUAGAUGAAGCAGCAAUCUGGAGGUGCUGCGAAUGAGUCGUAUCUUGCUCGCCUCAUGGAGGCAUGUAUCUUCUUUGUUUCUUUGGACCGGUGUUGUAUGUGUUGCAGCAUGGCGGGAUGGCGGCAUGCUGGAAUACAAAGAAAAACAACCAUAGUUGUUGUACCGUAUGAACAUCACUGCAUUCGCUCUUAAUUUAGUAGUACUAGUAACUUGUUGUGCUGCAGGAGUACUACUAUUAUCAUUACUACAUGUUUGUAUGCCUGUCU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
70.12%
ME_num:
MEP:
25.2%
HE_num:
HEP:
4.47%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
spikelet
Tau :
0.78
Avg Expression:
3.24
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -4.85615338210089 | 0.0123912226633704 |
2 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | -1.48027396724121 | 0.00294719121005362 |
3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -4.19089824286399 | 0.0216811705683361 |
4 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | -2.91981602174179 | 0.0426936910654765 |
5 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -4.96101674547719 | 1.50973572657093e-81 |