OSA-LNC9271473


Function Link


Basic Info

Chr:

Chr1

Start:

4297755

End:

4302902

Strand:

-

Ref_name:

LOC9271473

Sequence
(XR_001544794.2):

AGAAAAUAUGCGUAGGUUUUCAUUUAAAAGUACUGCUCAUAUCGUAUACGAAAUUUACAAACGUACUAAAAUACAAAAUUGAUACUCAAAAAAUUUUAAAAGUUUGGUCAAGUUCGAGCCUCCCUCUAUGCUAUCGUCGAACUUUAUCGCACCCUCCACACCAUUCCAUCGCUAUUCUGUUAGGAUCUAACCGUUUGAUAGCUCUGACAUGUGGGCUCGGGUAAGAAAAAUAUCGCUAUUGCCCUUUCAGUUACGGGCCCCACCUGUCAUUCUCUCACCUCUCUAUUUCCCCUCUUCUCCUCUUCAUCUUUCUCUCGUGAGCAGCGGUGGCCGGCAGCCGGUGACGGGCGACCCAUGGCGGCGGCGACCGAGGAGGCACCCUCAACCUCAACCUCACCAUCGGCCCCUUCCCCCGAAGCCCCAGCCCUCGCGGCCGCCCGCGCGCGCGUCAUCGUCGUCUCGACGCGCCACCUCCUAGCACCAUCCAAACUGGCGGCGGCGAGGCCCACACGCCGGGGAGAUGGGAGGGAGGCUCGGAGGGAGAGGGACGUCGCGCUCCAUCGAGUCACAUGGCGGAGGGAAGGGGUGCGAUAUAGGUUGUCGUCGUCGCACAGCACCACCCCGUCGUCGUCGUCGCAGCGCCGCCCUCGUCGUCGUCGUCGCAGCGCUGCCCCCGUCGUCGUCGUCGCAACGCCGUUCCCAUCUUCGUCGUCAUCGCAACUGCCGCCGCCGCAACAGCCGCGGCGUCAAGGUGGCAAGGCAGCCAAGCGGCGCCGGUGGCCAGCCGAGGCGGUGCUCGGUGGCGCGGCAGCAAGGCGGCCAAGCGGCGCUCGGCCUUCUCCUCGCUGGCUCGCUCCUGCGCCGCAUCGCCGUGCUCGACCCUGCCACCGCCGCCGUCGACGUAGGUGACGCCGCACCCUCGCCACGCCCAUCGGAAUCUGGCAAGCUCCACGCCGGCGACCUUGCCACCGCCGCCGUCGACGCAGGUGAGUAGCGGGGUCGUCGUCGGGGAUGCGCUGGAUCCUCGCCGCCAUGGGGGCCGCCGAGGAGGCCGCGGCGUCCGCGGCCGCCACCGCCGCCGUCCAGUGCUCUUCGUCGGUGGUGCCCUCCGUCCCGGCUCUCUCUCUCUUCUCUCUCAACCCUAAGGACAACAAAGUCAUUUGACUGCGCUGUUUGACACUGUUAGGACUAAAAACAGAUGGAAUAGUGUGGAGGGCGCGAUAAAGUUCGACGAUGGUAUAAAGGGAGGCUUGAACUUUUUAGUGACAGAAGGCAGGGGUCAUCUUUUUUAACGCGCACAGGCAAAAGCAAAAGUAAAAGCAGCUGGACAGCUGGUUGCGUGUGGCUCGCUGGGUGUGUGUGUCCUGCAGUAAUGUGUGCCUGUGAGGUGCAACUACUGUACAAGCUAGGGGUAGCUAGCUAGCGCCUAGGGUUAGCGCCCAGAGCCCCAGAGGAAGGCAUAGGCUAUCGAUCUCUCCCUCUCUGCCCUGCCUUUCUUGUUCGCUCGCUUAGAGAGAGAAGCAGCAUGGAGAGCGGAGGGCCGGGCGGGUAGCAGCUCCCCUCAGUUCCCCUCAGUUCUUCUUCCUCCCUCAGUUCUUUCUCCACCUCAGUGACUCCCACAGAGACCAUGAUUCACUCCGGCGGCCGCGGCCGCCGCCGCCGCCGUCGCCGUCGCCGCGGGAGCAAAGGGCCGUACGAGCGCGGCGGCGGCGGCGACGGGGACCAAGCUGCCAAGGGCUGCAUGGACGCGGCGGCGACGGGCGCAAAGACAGUUCUCCGGCGACUCUACGCUGUGCAAGAAGAAGGACAACACGCUGGACGAGGUGAAGGAGGUCGUCCAUGUGAAGCAAGAUGCUCCUCCACCAUCUUCUUUCUUGCCCAAUUCCUCGGGGUUACAAUCAUUAUUUGUCAAGGCAUGUGGGGUUAAUAUAUCUGUACAAGUGGAUUUAUCUAACACAAAAGUUGAUUAUCUAAUCAACUCUGCUUGUCAAAAGAUGAGAGUAAAUGUUAAGGACACAUAUGCAGUAUUAUGUGGAAAGAUUUUAGAGUACAAUAAGUCAAUAAGUCACUGUCAGACUAUCCUUUAUAUCGGAAUUCAACGAUUGAAAUCCGUUUUCGAGGAAGAGCCGGCCAGCCCAUGACAUUUGAUGAGAAGUUUGAUGAUAUCCAUGCGAACACAUGGUUCUACACGGUUGAUUUAGUACCUGCACUUCAACGUCAAACUCGUACAAAUCCGCCGGUUCUACCAUGGUUAUCAGUAAGAUACUUCUCGGACUUUGCAUCAUACAACAUCCAAAAGGUUUUGAACCACAUCACUGCAAUGCACUGGGAAAACCUGAGCUACAAUGGCGCUUUCAAUAGCGACAACAUCAUAUUUCACAAUGGUGCUGUUACCAUCCAGGGUGUUCUUACAGUACAAUUUAAUGGUGUGACAUGUGCAAAAGAUUUUGCAAAGCUUUAUUCCAUAUUCAUUGCAAAAUUUACACCACAUGGUAUUCCAUUGUACUUUAAUGAUCUGCUUGAGUACUUGAGGAAUUGUCCAAAUGGAGAGAAUUCCAAUGAUGAGGCUAUUGUGGCAUUUAUUAUCAAUCACCCCUGUCUCCAAUCUUAUUUAGAGAGGAUGUCACAAUUAGAGCAUCUUGAUAACAUUUAUCCUAGACAUCCUGGACAUUCUACAACAAAUAUAUCUGCUCUGGGAACAUUUUCUUGGCAAGACAAAGUCGUCAGGUCCCAGAAUUACGUCGUGCUUUUAUUUAUGGUCCCAAUGGAAGAGCAUAUUUGGUAAAUGGAGUGUGGCAUAAUCUAAAUCCUUUGUAUACUAAUGAUCCAAAAGGAUGCCUUCACUUUGCAAACAACUUCUUGAAACAUGCACAAAACAGAUUCAUGUUACAUGAAGUUGAGGCUGCAUUUUCAAAUUGCCUGGAGGAAUAUCUACCCCAUGUAUUAAAAGCGAUAGCGCGCCUUGCUCAACAUAACCCCCAAGGCCGGCAGUAUCUAGUUGACGUGCUUUCGAACAAAAACGCAGAUAAAUCGUCAGGAAACUAGGUUGGAGAGAUUUCGUGACAGGAAACUAGAUUCAUAGAUGAAGCAGCAAUCUGGAGGUGCUGCGAAUGAGUCGUAUCUUGCUCGCCUCAUGGAGGCAUGUAUCUUCUUUGUUUCUUUGGACCGGUGUUGUAUGUGUUGCAGCAUGGCGGGAUGGCGGCAUGCUGGAAUACAAAGAAAAACAACCAUAGUUGUUGUACCGUAUGAACAUCACUGCAUUCGCUCUUAAUUUAGUAGUACUAGUAACUUGUUGUGCUGCAGGAGUACUACUAUUAUCAUUACUACAUGUUUGUAUGCCUGUCU

Sequence
(XR_001544796.2):

AAGAAAAUAUGCGUAGGUUUUCAUUUAAAAGUACUGCUCAUAUCGUAUACGAAAUUUACAAACGUACUAAAAUACAAAAUUGAUACUCAAAAAAUUUUAAAAGUUUGGUCAAGUUCGAGCCUCCCUCUAUGCUAUCGUCGAACUUUAUCGCACCCUCCACACCAUUCCAUCGCUAUUCUGUUAGGAUCUAACCGUUUGAUAGCUCUGACAUGUGGGCUCGGGUAAGAAAAAUAUCGCUAUUGCCCUUUCAGUUACGGGCCCCACCUGUCAUUCUCUCACCUCUCUAUUUCCCCUCUUCUCCUCUUCAUCUUUCUCUCGUGAGCAGCGGUGGCCGGCAGCCGGUGACGGGCGACCCAUGGCGGCGGCGACCGAGGAGGCACCCUCAACCUCAACCUCACCAUCGGCCCCUUCCCCCGAAGCCCCAGCCCUCGCGGCCGCCCGCGCGCGCGUCAUCGUCGUCUCGACGCGCCACCUCCUAGCACCAUCCAAACUGGCGGCGGCGAGGCCCACACGCCGGGGAGAUGGGAGGGAGGCUCGGAGGGAGAGGGACGUCGCGCUCCAUCGAGUCACAUGGCGGAGGGAAGGGGUGCGAUAUAGGUUGUCGUCGUCGCACAGCACCACCCCGUCGUCGUCGUCGCAGCGCCGCCCUCGUCGUCGUCGUCGCAGCGCUGCCCCCGUCGUCGUCGUCGCAACGCCGUUCCCAUCUUCGUCGUCAUCGCAACUGCCGCCGCCGCAACAGCCGCGGCGUCAAGGUGGCAAGGCAGCCAAGCGGCGCCGGUGGCCAGCCGAGGCGGUGCUCGGUGGCGCGGCAGCAAGGCGGCCAAGCGGCGCUCGGCCUUCUCCUCGCUGGCUCGCUCCUGCGCCGCAUCGCCGUGCUCGACCCUGCCACCGCCGCCGUCGACGUAGGUGACGCCGCACCCUCGCCACGCCCAUCGGAAUCUGGCAAGCUCCACGCCGGCGACCUUGCCACCGCCGCCGUCGACGCAGGUGAGUAGCGGGGUCGUCGUCGGGGAUGCGCUGGAUCCUCGCCGCCAUGGGGGCCGCCGAGGAGGCCGCGGCGUCCGCGGCCGCCACCGCCGCCGUCCAGUGCUCUUCGUCGGACUAAAAACAGAUGGAAUAGUGUGGAGGGCGCGAUAAAGUUCGACGAUGGUAUAAAGGGAGGCUUGAACUUUUUAGUGACAGAAGGCAGGGGUCAUCUUUUUUAACGCGCACAGGCAAAAGCAAAAGUAAAAGCAGCUGGACAGCUGGUUGCGUGUGGCUCGCUGGGUGUGUGUGUCCUGCAGUAAUGUGUGCCUGUGAGGUGCAACUACUGUACAAGCUAGGGGUAGCUAGCUAGCGCCUAGGGUUAGCGCCCAGAGCCCCAGAGGAAGGCAUAGGCUAUCGAUCUCUCCCUCUCUGCCCUGCCUUUCUUGUUCGCUCGCUUAGAGAGAGAAGCAGCAUGGAGAGCGGAGGGCCGGGCGGGUAGCAGCUCCCCUCAGUUCCCCUCAGUUCUUCUUCCUCCCUCAGUUCUUUCUCCACCUCAGUGACUCCCACAGAGACCAUGAUUCACUCCGGCGGCCGCGGCCGCCGCCGCCGCCGUCGCCGUCGCCGCGGGAGCAAAGGGCCGUACGAGCGCGGCGGCGGCGGCGACGGGGACCAAGCUGCCAAGGGCUGCAUGGACGCGGCGGCGACGGGCGCAAAGACAGUUCUCCGGCGACUCUACGCUGUGCAAGAAGAAGGACAACACGCUGGACGAGGUGAAGGAGGUCGUCCAUGUGAAGCAAGAUGCUCCUCCACCAUCUUCUUUCUUGCCCAAUUCCUCGGGGUUACAAUCAUUAUUUGUCAAGGCAUGUGGGGUUAAUAUAUCUGUACAAGUGGAUUUAUCUAACACAAAAGUUGAUUAUCUAAUCAACUCUGCUUGUCAAAAGAUGAGAGUAAAUGUUAAGGACACAUAUGCAGUAUUAUGUGGAAAGAUUUUAGAGUACAAUAAGUCAAUAAGUCACUGUCAGACUAUCCUUUAUAUCGGAAUUCAACGAUUGAAAUCCGUUUUCGAGGAAGAGCCGGCCAGCCCAUGACAUUUGAUGAGAAGUUUGAUGAUAUCCAUGCGAACACAUGGUUCUACACGGUUGAUUUAGUACCUGCACUUCAACGUCAAACUCGUACAAAUCCGCCGGUUCUACCAUGGUUAUCAGUAAGAUACUUCUCGGACUUUGCAUCAUACAACAUCCAAAAGGUUUUGAACCACAUCACUGCAAUGCACUGGGAAAACCUGAGCUACAAUGGCGCUUUCAAUAGCGACAACAUCAUAUUUCACAAUGGUGCUGUUACCAUCCAGGGUGUUCUUACAGUACAAUUUAAUGGUGUGACAUGUGCAAAAGAUUUUGCAAAGCUUUAUUCCAUAUUCAUUGCAAAAUUUACACCACAUGGUAUUCCAUUGUACUUUAAUGAUCUGCUUGAGUACUUGAGGAAUUGUCCAAAUGGAGAGAAUUCCAAUGAUGAGGCUAUUGUGGCAUUUAUUAUCAAUCACCCCUGUCUCCAAUCUUAUUUAGAGAGGAUGUCACAAUUAGAGCAUCUUGAUAACAUUUAUCCUAGACAUCCUGGACAUUCUACAACAAAUAUAUCUGCUCUGGGAACAUUUUCUUGGCAAGACAAAGUCGUCAGGUCCCAGAAUUACGUCGUGCUUUUAUUUAUGGUCCCAAUGGAAGAGCAUAUUUGGUAAAUGGAGUGUGGCAUAAUCUAAAUCCUUUGUAUACUAAUGAUCCAAAAGGAUGCCUUCACUUUGCAAACAACUUCUUGAAACAUGCACAAAACAGAUUCAUGUUACAUGAAGUUGAGGCUGCAUUUUCAAAUUGCCUGGAGGAAUAUCUACCCCAUGUAUUAAAAGCGAUAGCGCGCCUUGCUCAACAUAACCCCCAAGGCCGGCAGUAUCUAGUUGACGUGCUUUCGAACAAAAACGCAGAUAAAUCGUCAGGAAACUAGGUUGGAGAGAUUUCGUGACAGGAAACUAGAUUCAUAGAUGAAGCAGCAAUCUGGAGGUGCUGCGAAUGAGUCGUAUCUUGCUCGCCUCAUGGAGGCAUGUAUCUUCUUUGUUUCUUUGGACCGGUGUUGUAUGUGUUGCAGCAUGGCGGGAUGGCGGCAUGCUGGAAUACAAAGAAAAACAACCAUAGUUGUUGUACCGUAUGAACAUCACUGCAUUCGCUCUUAAUUUAGUAGUACUAGUAACUUGUUGUGCUGCAGGAGUACUACUAUUAUCAUUACUACAUGUUUGUAUGCCUGUCU

Sequence
(XR_001544797.2):

AAGAAAAUAUGCGUAGGUUUUCAUUUAAAAGUACUGCUCAUAUCGUAUACGAAAUUUACAAACGUACUAAAAUACAAAAUUGAUACUCAAAAAAUUUUAAAAGUUUGGUCAAGUUCGAGCCUCCCUCUAUGCUAUCGUCGAACUUUAUCGCACCCUCCACACCAUUCCAUCGCUAUUCUGUUAGGAUCUAACCGUUUGAUAGCUCUGACAUGUGGGCUCGGGUAAGAAAAAUAUCGCUAUUGCCCUUUCAGUUACGGGCCCCACCUGUCAUUCUCUCACCUCUCUAUUUCCCCUCUUCUCCUCUUCAUCUUUCUCUCGUGAGCAGCGGUGGCCGGCAGCCGGUGACGGGCGACCCAUGGCGGCGGCGACCGAGGAGGCACCCUCAACCUCAACCUCACCAUCGGCCCCUUCCCCCGAAGCCCCAGCCCUCGCGGCCGCCCGCGCGCGCGUCAUCGUCGUCUCGACGCGCCACCUCCUAGCACCAUCCAAACUGGCGGCGGCGAGGCCCACACGCCGGGGAGAUGGGAGGGAGGCUCGGAGGGAGAGGGACGUCGCGCUCCAUCGAGUCACAUGGCGGAGGGAAGGGGUGCGAUAUAGGUUGUCGUCGUCGCACAGCACCACCCCGUCGUCGUCGUCGCAGCGCCGCCCUCGUCGUCGUCGUCGCAGCGCUGCCCCCGUCGUCGUCGUCGCAACGCCGUUCCCAUCUUCGUCGUCAUCGCAACUGCCGCCGCCGCAACAGCCGCGGCGUCAAGGUGGCAAGGCAGCCAAGCGGCGCCGGUGGCCAGCCGAGGCGGUGCUCGGUGGCGCGGCAGCAAGGCGGCCAAGCGGCGCUCGGCCUUCUCCUCGCUGGCUCGCUCCUGCGCCGCAUCGCCGUGCUCGACCCUGCCACCGCCGCCGUCGACGUAGGUGACGCCGCACCCUCGCCACGCCCAUCGGAAUCUGGCAAGCUCCACGCCGGCGACCUUGCCACCGCCGCCGUCGACGCAGGACUAAAAACAGAUGGAAUAGUGUGGAGGGCGCGAUAAAGUUCGACGAUGGUAUAAAGGGAGGCUUGAACUUUUUAGUGACAGAAGGCAGGGGUCAUCUUUUUUAACGCGCACAGGCAAAAGCAAAAGUAAAAGCAGCUGGACAGCUGGUUGCGUGUGGCUCGCUGGGUGUGUGUGUCCUGCAGUAAUGUGUGCCUGUGAGGUGCAACUACUGUACAAGCUAGGGGUAGCUAGCUAGCGCCUAGGGUUAGCGCCCAGAGCCCCAGAGGAAGGCAUAGGCUAUCGAUCUCUCCCUCUCUGCCCUGCCUUUCUUGUUCGCUCGCUUAGAGAGAGAAGCAGCAUGGAGAGCGGAGGGCCGGGCGGGUAGCAGCUCCCCUCAGUUCCCCUCAGUUCUUCUUCCUCCCUCAGUUCUUUCUCCACCUCAGUGACUCCCACAGAGACCAUGAUUCACUCCGGCGGCCGCGGCCGCCGCCGCCGCCGUCGCCGUCGCCGCGGGAGCAAAGGGCCGUACGAGCGCGGCGGCGGCGGCGACGGGGACCAAGCUGCCAAGGGCUGCAUGGACGCGGCGGCGACGGGCGCAAAGACAGUUCUCCGGCGACUCUACGCUGUGCAAGAAGAAGGACAACACGCUGGACGAGGUGAAGGAGGUCGUCCAUGUGAAGCAAGAUGCUCCUCCACCAUCUUCUUUCUUGCCCAAUUCCUCGGGGUUACAAUCAUUAUUUGUCAAGGCAUGUGGGGUUAAUAUAUCUGUACAAGUGGAUUUAUCUAACACAAAAGUUGAUUAUCUAAUCAACUCUGCUUGUCAAAAGAUGAGAGUAAAUGUUAAGGACACAUAUGCAGUAUUAUGUGGAAAGAUUUUAGAGUACAAUAAGUCAAUAAGUCACUGUCAGACUAUCCUUUAUAUCGGAAUUCAACGAUUGAAAUCCGUUUUCGAGGAAGAGCCGGCCAGCCCAUGACAUUUGAUGAGAAGUUUGAUGAUAUCCAUGCGAACACAUGGUUCUACACGGUUGAUUUAGUACCUGCACUUCAACGUCAAACUCGUACAAAUCCGCCGGUUCUACCAUGGUUAUCAGUAAGAUACUUCUCGGACUUUGCAUCAUACAACAUCCAAAAGGUUUUGAACCACAUCACUGCAAUGCACUGGGAAAACCUGAGCUACAAUGGCGCUUUCAAUAGCGACAACAUCAUAUUUCACAAUGGUGCUGUUACCAUCCAGGGUGUUCUUACAGUACAAUUUAAUGGUGUGACAUGUGCAAAAGAUUUUGCAAAGCUUUAUUCCAUAUUCAUUGCAAAAUUUACACCACAUGGUAUUCCAUUGUACUUUAAUGAUCUGCUUGAGUACUUGAGGAAUUGUCCAAAUGGAGAGAAUUCCAAUGAUGAGGCUAUUGUGGCAUUUAUUAUCAAUCACCCCUGUCUCCAAUCUUAUUUAGAGAGGAUGUCACAAUUAGAGCAUCUUGAUAACAUUUAUCCUAGACAUCCUGGACAUUCUACAACAAAUAUAUCUGCUCUGGGAACAUUUUCUUGGCAAGACAAAGUCGUCAGGUCCCAGAAUUACGUCGUGCUUUUAUUUAUGGUCCCAAUGGAAGAGCAUAUUUGGUAAAUGGAGUGUGGCAUAAUCUAAAUCCUUUGUAUACUAAUGAUCCAAAAGGAUGCCUUCACUUUGCAAACAACUUCUUGAAACAUGCACAAAACAGAUUCAUGUUACAUGAAGUUGAGGCUGCAUUUUCAAAUUGCCUGGAGGAAUAUCUACCCCAUGUAUUAAAAGCGAUAGCGCGCCUUGCUCAACAUAACCCCCAAGGCCGGCAGUAUCUAGUUGACGUGCUUUCGAACAAAAACGCAGAUAAAUCGUCAGGAAACUAGGUUGGAGAGAUUUCGUGACAGGAAACUAGAUUCAUAGAUGAAGCAGCAAUCUGGAGGUGCUGCGAAUGAGUCGUAUCUUGCUCGCCUCAUGGAGGCAUGUAUCUUCUUUGUUUCUUUGGACCGGUGUUGUAUGUGUUGCAGCAUGGCGGGAUGGCGGCAUGCUGGAAUACAAAGAAAAACAACCAUAGUUGUUGUACCGUAUGAACAUCACUGCAUUCGCUCUUAAUUUAGUAGUACUAGUAACUUGUUGUGCUGCAGGAGUACUACUAUUAUCAUUACUACAUGUUUGUAUGCCUGUCU


Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

345

LEP:

70.12%

ME_num:

124

MEP:

25.2%

HE_num:

22

HEP:

4.47%

Type:

HCR (High-Capacity ncRNA)


Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

spikelet

Tau :

0.78

Avg Expression:

3.24

Tip: OSA-LNC9271473 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN-4.856153382100890.0123912226633704
2Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min"-1.480273967241210.00294719121005362
3Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN-4.190898242863990.0216811705683361
4Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8-2.919816021741790.0426936910654765
5Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae-4.961016745477191.50973572657093e-81