Chr:
Chr8
Start:
8229390
End:
8237989
Strand:
-
Ref_name:
LOC9271461
Sequence
(XR_001548089.2):
AUUGCCAUAUCACAUCCUCUCUCUCUCUUUAACCUCUCUUCCGUCCUACGCCUCCAUUGCAGCGUUGCCGCCUCAGCUUCCGCUUCCGCUGCCACCGCCGCCGCCGCCGCCGCCAACCACCCUAUCCCAGCCGCCAUCUGCACAUCCCCAAAUCGCUCACUUGAAUCUAGCUAGCAGCUGCAGUCUCGAGUAGCCGCAUCUAUCGAUCUGAAUCUAGCGGAGGAACUAAUGCUCUGUACGUAUCCGGGCCGGGGCUCUCCAAUCCAGAGCUCAUCAGUCCCACCGAGGCUGACAAGUUGAUGAACAGCUUCCAAGUGUACUUCAAUAUGCUUGUGGAUAUGAGUUCUGUUGGCACAUUGCAAGAACCGAUGCUCAUGUUCAUGAAGAAAAGCGAGUGGAGGAGACAGAAAAACUCUAUGUGCGGCGCCGGCUCAUCCUAAUUGAUUACCUGGUAUUCUCCGGCACGCUCUGCAGCAAGGUGGCCUCCUUCUCCACCAGCGUCGAGAUGCCGGCGAUCAAACUCCCAACCAAACUCACGGCGAUCUCCGCCAUCGAGCUCUAGCUAGGCCUCUUCUCUGCAAAGGUGAAUUUGCAGCCGCGAGUGAGUUUGUGUUUUGGCAAUCAAGCUCCCCUAUGGCUGCCGUUGUGCCGUAUAUAUGCUACUGGUUCGUACUGCUAUGUCCGGCACCACAGUCCACAAAGGUUUUGUUGCCCACUUUGCCCUUGUUGGGUAUAUAAGGCUGUGUUAUUCCCUCACCUUUCCCAACUACUAAACGACGGUACGUAUUUUGCAAACAGUUCUAUAGGGAAGUUGAUUUUAAAAAAUCAUAUUAAUCUAUUUUUCAAGUUUAUUUUAGCUAAUAUUUAAUAGAUCAUACACUAAACGCCGCUUUGUUUUGCGUGUUUGGGAGUGAGGGUUUCCAACCCUCCUCGCUCCGCAACUUAGCCUAAUUCACUUUUUGUGAGGCCUGUAUAGUUUGUUUCAGAAUUUUUUUUACCGAAAAUUUGUUACGAAUUGGAGACCAAUUUUCUGUUUAGAAUGAGGCAGGAUUAUAGUUUUUGCUAACCAGCUCAAAUAUAACCCACCCUGCCUACCCAGUUCCGCCCCUUAUGUAAAUAAAUAUGACGAUAUUGCAGUAAGAUUUUGGAUGCAGUAUCAAAUAUUUAUCUGUUCGAUGUAAAUAUGUAAUGUAUACAUGUAAAUUUUCCUUUAGAUGAAAAUGUAUAAUUAUAAAUUUCUUACUAAUAAGCGGUCAGGGCAAAACGUCUGAAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
2.64%
ME_num:
MEP:
89.84%
HE_num:
HEP:
7.32%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot_apical_meristem
Tau :
0.72
Avg Expression:
8.04
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 1.89657951038039 | 2.37945679598403e-05 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 1.75287268603036 | 0.000106436095696534 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 1.80292377179211 | 2.15146502160602e-05 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 1.64775257134003 | 0.00325892203413967 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 1.84760221678163 | 9.81024292700904e-05 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 1.79350475309875 | 0.000209616934452917 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 1.61955802665152 | 0.00015292679498332 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 1.62875068079943 | 0.00043083333219798 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 1.72633513038104 | 2.27377610693911e-05 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 1.41287472346283 | 0.00467215066878212 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 1.08635667181118 | 0.0257684855265092 |