Chr:
Chr2
Start:
34505568
End:
34507531
Strand:
+
Ref_name:
LOC9271456
Sequence
(XR_001542903.2):
UCCUCCCUGAAACCCUAGCCCCCGUGUCGCUGCGCAGCCUCACCCUCCUCGCGCCGCCUCUCCCCGCCCCACCGAUGCCCUGCAGCGCCGCUCCAUCCUCCGACGCCUGUCCUGGCCCCGACACCGCCGUGCGUCGCCGCAUGUCCUCCACUGCCUUUCUCUCUCUCUCUCCUUGCUGCCGGUGCCGCUGAGCUCGAGCUCGAGCUCAAUGGUGAGAGGCUCAGUACGUCGACAACGAGUCGGUCGAUCCAACAUUCAAUCGGGUUAGGUCUUCGUCCUUCUCACUACCUCGUCGUCGAUUUACCUGUCUACUCAAUACAAGCUCCACGCUGCCUUCCGAUCUGGUGGUAGCUGCCGUGCAGCGAUCGGAUCUGGCGAAGGGAGGAGGAGCGCACGGCGGCGUCGACCUGAAGUAGGUUGCUGGCGGCGUCCCCAGCGUGGUGGUGUAGGCCGAUGGGCCCAGGAGGCGGACGCCUCGAGCUUGCGAGAAGAUGGCGUCGGCACGGAGUUCUCGAAGGCGAGGAGUCGGUCUGGCGGCGCAUGACUUGAUUUUCGAGUGAUGUGGGGGCUCCAUGAGCAGUGGCAAGCUCCUGUUUUUUUCUGGUCAUCAGAGGGAGGAGGAGUUGUCUCCAUCGUCUAGCCGUUCUCUGGAUGCAUCAAGCUUGCCCUCAUCGCAUCACGCCAUCGUCCACUUGUAUUUGAUUUUCAUUUCUAUUCCCCACCAAGAUUUGAGGUGUUUGUUUUGUGUGAUGCCCUGCCUACAAGGUGUUCGUUGUUUUUCCUACAAGCAUGGUGAUGUGGCGAUCUUAAAGCUAUCAGUUACGCCUGCAUGACCUGUAAUGUAACCUCUCAUUUAUUGCACGUUUGGAUGCAACAUUUAGGUGGCAAGGAGAUUAUACAUUGGCGAUAGCAUGGAGCAACAGGCAGAAAUGCCAUUCUUUGUUCAUUUUAUUUUCCUUUUUUUUUUAGUUUGAUUAGAUUAUGGUGCUUAAGGAGCUGGAUUUGCUGUUAAAUCUUAAAUGAUUUAAACAGCGGGCUAUGGGUUCACUAUUGGCUAGAGGUGUUCAGAUCGUUUAAUUCUUACAUGGCAUUUCUUUUGGGUCCUGCAUCUAUAAUCCUGGUUGUCUUUCUGAAUUGAGAUAAUACAAAGCAUGAGCCUAUAUGGCUCUUUCUGAUCACG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
9.96%
ME_num:
MEP:
13.41%
HE_num:
HEP:
76.42%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot_apical_meristem
Tau :
0.76
Avg Expression:
72.71
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 1.32563535952027 | 2.99435162232095e-17 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -1.60984657545248 | 8.90215709109992e-05 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -1.12758620249774 | 5.99735370657789e-06 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -1.51898294070596 | 3.86200895061639e-12 |
| 5 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 1.06130997050308 | 0.00160570955668353 |
| 6 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 1.10010199213209 | 1.51553383925251e-08 |