RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNC9271406

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr3

Start:

12366079

End:

12367629

Strand:

-

Ref_name:

LOC9271406

Sequence
(XR_001544330.2):

CGCACAUCCGACGGCCGGCCCACACAAGCGAGUCCGCAUCGCACCUCAAUCUCAGCUCGGCUCAAGAGCGAUCUCAACACACCACAACUCGGCUCGCGCUCGCUCCGAUCGGCUCGAUCUAGUCCGAGAUGCAGUCAUCGUUCCCCUCCGCCUGUUUCUUAUCCCGUCGCCCCUUUCUCAUCCGCUAUUGGGCGCGUGGAGACGGAAUGCGGCGGCGGCUCCCUCGGACAGCUAGGGCAGUGGCGGCGCCCUCCCGUGCCUGGAGCAGGGCAGUGGCGGCACCCUCCCAUGCCUAGAGCAGGGCAGCAACGAUGGAAGGGCCAGGCGGCACCCUCCCGUGCAUUGAGAGUUUCAUAGUUUGAUUGCUCGGUUUUGGUUUUUAUUGCGGAGGCCAAUGCAGAAUUGCAGGUGAGAUAUAUGGGGUGCGGCAUGAAUGGCAAUUGAAGAUUGGAAGAGCAUGAACGAGAGGAUGCUGAAGAAGUGGCAUAGAACAAUUAAUGACAAGAUAAUGAAUGUAGCCUUUCUUUGUAAUUCCUACUAUGUAGUAUAUACACUAUUAGGAGUUUGUAAAGAUUCAGAACACCUUGUAUCCUGAGAACUAGUUUUGCCAGAUGUCAAGUUAUCCUGAGAACUAUUGUAACCUUGUGCAAAAUACAAAAGAGGAAAAUUGAUUGCCUAAAAGGAUGGUAAAUGCAGCAGGCAGAAGUGGAUGGUGCUAAAAGGAUUGUAGUUUGAUGAAUGUAGCCUUCGCUGUUAAUCCAUACAAUGUAGUCUGUACACUCUUAGGAGUAUGCAAGGAUUGUAGUCUAGAUGCUGUAAGUUUGGACCGCAUUUUUGGUCAAAUUGCAAGGAAACUCAUAUCGCUAUGUAAUCUGUACAAUGUAUUUCUUUUAUUUGAAAUACAUAUGGCAUGUUGGAUGUUCUGAAA

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

110

LEP:

22.36%

ME_num:

22

MEP:

4.47%

HE_num:

359

HEP:

72.97%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

caryopsis

Tau :

0.70

Avg Expression:

44.74

Tip: OSA-LNC9271406 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi-1.409095995201170.000260894853248927
2Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated-2.337331262816311.20986171364868e-29
3Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min"-1.08770380192193.34855765200555e-08
4Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12-1.013029356261193.06468751397225e-12