Chr:
Chr9
Start:
4813270
End:
4816535
Strand:
+
Ref_name:
LOC9271395
Sequence
(XR_001539757.2):
UUCUGCCUCUCCCAGACGCGUCGCCACUCUUCACCCACCAUUCCAGUGCCGAUCCAUCCGAGGGAGAGCAUCCUCGCUGCUCUUCUCCACUGGUUCUCCAUCGCCGGCCGCGAAGAAGACGAUGGCCGCAAUCGUUGAUGAGCCGCGGUCGUUUCCUCUUCUCUUGCGUUCCAUACUCUCCUCACCAUGCCGAAUAUUUCUCCUUUUGAUUUCAUCCUCUCUGGUGCAGCCAAUCGACGGAAACGCUGCAGUGCACACCGGAGCUCUGGAGCGCGCUCUGUGCACCGCCGCAGUGACAUCAUCGCCGUUCCCGCUUAUCUGCACCAAGCCGGGCCAAGCUGUCGCGCCAGCGUCUUCGCCUCGACCUCCUCUCCAUUUCCCCUCAAGAAUCUCGAAGGAUGGUGCUACGAGUGUGGAGAUCGUCCACCGUCUUCUCCACCUCAGGUCACCGUCGCCGUUGCCGAAUCCACCCCCUCCGUUCUUGGAGCUGAUUGAGCCAUCGCCGUUCACCCGGAGGUUCUUGCCGCCGCCGAGCCGUUACACGAGCCGCCGUCAUCAACCUAGCUACCCCAGCCAUGUCUAGCAUCUCGAUGAUUGCUUAAUCGGUGAAGAAGUGAUUUAGGUGCUGACAUUUUCCUGAUUCAAGGCAAGUCCCACCUCCCUCUCUUUGAUCACUUUGAACCUAUGUUUUGGAGGUUAUUGAAAAUGUUUGCAAAUCUUGCAUGUCGAUUCUACACUAAUACAUUAAAAUCUUGUUAAACUUGUUAGACAAACUCCUAUUAUUUGCAUUAUCACCUUAACCCCACAUAUAUCCAUCUCCCUCAUUCCUAACCUUAGGAAUCAUAUCCUAGUACUACUUGGAAUAUGAGUUACAUUGUCACUAGUUCACUAUAUUGCUUAGCCAUGCUUAGAAUAGUUUUACUUAUCACUUGGGCUCAUAUUAACAUGAAAAAUGAUUUUAUUAAGUUUGGGACAGAUAUGAAUAAAUGAAGUAUUUGAUAAAUAAAAUGGUGGAAAACAUGGAUUUUAGGGUUGGGCCUCAAGUGGUGCACAUAUGAUGAUUAGUUGUGUACCGAUAGGGGGAGAGUGCGCCCAAACCGACCUAAGGACUUCACUCAAUGUCAGUUCAUUUCGUAUACAGUACAACCACAUGUGCUAGUAUGGGAUAGCCCAAGCUUAGUAAAUUAUUUAUGGUUUAGCCUUACAUUCUGGUAGGCCGGUGUGUAUGAGUUCGGAUAACUCAGAGGAACUUUCUAUUUACCCCGACGUGGUAGUUUAGGUGACUAAGUCUGUCCAAUACAACGGCAUUGUGCCACGUGGGUGGGUUCCCGUUGUGUCCGCCACCACGG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
30.08%
ME_num:
MEP:
47.56%
HE_num:
HEP:
22.15%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.94
Avg Expression:
178.60
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -7.51194951268347 | 4.84311772441001e-198 |
| 2 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | -5.71972109468585 | 0.00723722647996348 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -3.94464884521618 | 2.76979000532347e-26 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -10.6331192735358 | 7.06616813777377e-69 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -8.43707659319609 | 3.24128503862603e-87 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -8.88195262724525 | 4.13882674041637e-92 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -8.63336244890828 | 2.28264131595789e-112 |
| 8 | Vialone_Nano // leaf // control--/--Vialone_Nano // leaf // 100 mM NaCl | 2.63463181777416 | 0.00347389813232212 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -5.3843093380372 | 2.12850912834588e-293 |
| 10 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -2.15370600305515 | 3.00117575168477e-05 |
| 11 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | 1.7170094650415 | 0.00256955786636244 |
| 12 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | -7.11781098295638 | 7.28320245430697e-07 |
| 13 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | -1.29588541449575 | 0.00143697167815024 |
| 14 | Baldo // leaf // control--/--Baldo // leaf // 100 mM NaCl | 3.2543290959546 | 0.000832403965308628 |
| 15 | Vialone_Nano // root // control--/--Vialone_Nano // root // 100 mM NaCl | 4.38635416778057 | 0.0174112781746275 |
| 16 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -8.88105983083068 | 3.04389556483901e-140 |
| 17 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -9.04550784411825 | 1.65933436645143e-162 |
| 18 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 6.23128306666035 | 8.9755172583665e-21 |
| 19 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -1.37600298538582 | 0.000701096623505073 |
| 20 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -4.22781151168033 | 1.85518239155191e-21 |
| 21 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -8.61669014812227 | 5.56978181436041e-133 |
| 22 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 7.42675388790604 | 4.26581356466742e-37 |
| 23 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -9.56562457046188 | 9.4336504039785e-146 |