Chr:
Chr2
Start:
24554013
End:
24554700
Strand:
+
Ref_name:
LOC9271277
Sequence
(XR_001543434.2):
ACUUUGUUUUCUACCUUUCAUUGUCAUUCUUUCCCAUAAAGCGCACCACACUAGCCUCUUUAAAAUGCCACCGUGCAAGUUCUUGGCUCUCUCACUAGUCCCCUAGCUUUUGCCUCAUCAACAGCUGAGCAUUUGCAACUUCAAUCAGAUCAUGGUGGGUGCAUGGCAGGAGCAUCUUCAUGGUUCUUGAGAUCGGGAGCAGCAUAAGCAGUAUGAGGAUGGAGAAGAAUGGCUGUGCUGUUCCUUCUCCUCCUCCUUCUCAAGAACUCUUCAGUUUGUCCAUGCCUUUCAUGGCAUAAUUCCCUGGAUUCCAGAAUCUCUGGGUGGCUUAGGGAGGUAUGAACAAACCGGCAAGUCAUAAAUCGGCAAUAGUGAGCUCCGACUGGAUCUUACUCCUCAGUUUAUCAAAUUUAGUUUCAUUCCCUUGUAACCUUAUUCCAGUUGUUUCAACUUUCUAUUGUUCCCCCUUACAAAGGUCAUUGCAAUUGUAUCUUGUGGAAGCAGAUAAGAAGUUGUCUCGGUGUAAUCUUGUUUUGUGGAGUCAAAUGUUUGCUUGUGUGUUGCUUGGGAAUAUUUUAUCCGAGAUGCUCAUAUUUACCUUGAAAGAUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
0.61%
ME_num:
MEP:
4.67%
HE_num:
HEP:
94.51%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
root
Tau :
0.81
Avg Expression:
755.52
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | IR64 // panicle // Dawn--/--IR64 // panicle // Dusk | -1.74925297694572 | 0.00463160497685041 |
| 2 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -1.36995239465369 | 6.70187123325742e-07 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 3.52224897328167 | 1.23295361619114e-08 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 2.94921187044692 | 7.94599362601233e-06 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 6.54543329712429 | 5.95412917303115e-42 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 7.22132247168918 | 2.07617173772889e-39 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 6.85344461279685 | 2.87045673373339e-45 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 7.64594387423857 | 1.80725262282118e-57 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 4.33098214282479 | 1.15735933334508e-15 |
| 10 | Taichung 65 // shoot_apical_meristem // 0_days_after_shift--/--Taichung 65 // shoot_apical_meristem // 12_days_after_shift | -1.47130407108964 | 1.08128733888874e-21 |
| 11 | Nipponbare // shoot_apical_meristem // 0_days_after_shift--/--Nipponbare // shoot_apical_meristem // 4_days_after_shift | -1.28362800702357 | 1.09815446474602e-09 |
| 12 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h | -2.28677552233829 | 4.49949299980122e-06 |
| 13 | Nipponbare // root // "mock,1_day"--/--Nipponbare // root // "auxin(50CM_2,4_D),1_day" | -1.30868342317589 | 0.00648795464048981 |
| 14 | Nipponbare // root // "mock,14_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),14_days" | -2.07748227855205 | 6.87977854488664e-06 |
| 15 | Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days" | -1.68516434930685 | 2.97912768458155e-06 |
| 16 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | -1.44571352998548 | 8.13779591244297e-16 |
| 17 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | -1.515382374181 | 7.22295463451735e-13 |
| 18 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 2.56396458945646 | 0.000359659049269748 |
| 19 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 7.77083279365429 | 3.32508390059418e-61 |
| 20 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 5.15302375577356 | 3.28771556312421e-24 |
| 21 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | -1.28150421004681 | 0.00309132672229872 |
| 22 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -1.72464209199444 | 1.50950880513288e-21 |
| 23 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_RS105 | -1.16381131853948 | 2.94779339519052e-06 |
| 24 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | -1.10110473102351 | 0.00106635246252603 |
| 25 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7331 | -1.71681272748484 | 4.22375578440192e-10 |
| 26 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | -1.68578274570789 | 1.71881395888496e-11 |
| 27 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -1.52768492112144 | 6.25796251693204e-38 |
| 28 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 5.00626779864501 | 1.12686950680532e-20 |
| 29 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 7.78700857760313 | 3.8958957203557e-62 |