Chr:
Chr8
Start:
15736212
End:
15740458
Strand:
-
Ref_name:
LOC9271110
Sequence
(XR_001548153.2):
AGAGAGAGAGAGUACUGUUAUAUAUCCUGUAAUGGCCACACAGCCUUACACGCUUGCAUGCACUCCCGUCUAAUUUACAAUGAAGGAGGCAAGUUUUUCUUUCUUGGCAAGGAAUUAAAAAGUCAAAUUACAAGCACCGACCUAGCUAGUUCGAAAUUUUGACCCGGUCAGUGCAUGAGUUACGUCCGAGGACGUAGAAAUUGACGAGAAAUUAGUGAUGAAACAAUAUGAAGAUCGGCACACGCUUUAAUUUAAUUCACGGCAAUGCUUGAAGACAAGCGAUCGAGUUAAAUUAGUGGUUCGAUCGGUAGGCGACUGAGCUUAUAUUAAUCGGCCAUAUAUUGGACCAGGCAAAUUAAUGGCGACCUCAUCAACAGUUAACUACACUAGCUUGGAAAUUUCAACGAGGCCAUCUAGAUUUAUAGCCUGCACCUGCAGCGAGCAUAUGAAGAUUUUUGCCAAGAACGUAACCAUCAGAGAUUAUUUACCUGCAGUUGCAACUGAAAUCAAGUUGGAAGCAGGGUUUUACUAUUUCGUUUUCUAGCAAAAUUUAAUUUCGGUACUUUUUGACAGAUAUUACUUGGAAGUUUAACAUAUCUUGAAUCAAUUUAAGAAAUUUUGAUCAAAUUCACAAAAAAUUAAAAAGAAAAAAGAAAUUUCCGGGCGAGAUAUAUAUGCUUGCCGGUAAGGAGCGAAAUUUCAAAAAUUCGUUCCGAAAUUGCAAUCUCUGAUUAGAAGUUCUGCAUUGUUUGCACUCUGCAACAACUACGCGCAUUCAGGAACAAAUCAUGCACAUGCCUGCUGCCGAUCUAUUCGUCUUCAUGUGUAUAUAUAUAUACUAUAUAUUAGCAUGUCUGAAUGAAUUAAUGAGUCCAAGUUUUAGUUAAAUUUGUAGCCAGGGCGGUUGAUCGAUCGACGAGCUCUGCCUACGUACGGCUUGAACUGAAUCAAAGACAGGAAUAACGCAGGAAAAUACCUCAUAUUCUUCAGGAUGGUCGAGAGAUCGCUCAGUAAAUUAACCUCCUGUACAAAAAAUUCAAGGGUAGUUAGAUGAAGAACGCGAAACCAGUCCAGUCAAUCAAAUAGUUUAGCCGGUAAUUUACAUUGUCAUAGCCAUGGCUGUACAAAUAAUUCCUAUUGAGAAUUACUUGAUAUUCAAAUACAUUGCACUAUAUGCGUAUGGAAAGGCAUACAUGAUGCAUGCCUUUCCAUGCCUGAACAAAUCCCUGAAUGCCUUUCCAUGCCUGAACAAAUCCCUGAAUGCCUCAAGAGCUAACAAGCUAACACAAACCAACUUAUGUAUAGGUUACAAUAUAAAAACAUAUGUAUGCAAUACCACUACUUGAUUAUCUGUCUUCUUAAAUAUAUAUCUGGGGAUGAAAUAUUAAUAGCAAGUUAUGUAAGAUGGGUUCAAACAAGGGACAGACACAAACACUACUUGAUUAUCUGUCUUCUUAAAUAUAUAUACAUCUGGGGUUGAAAUAUUAAUAGUAAGUUAUGUAAGAUGGGUUCAAACAAGGGACAGACACAAGAGAGCAUCACCAUCUUCCAUGACUAUUCCAGCGUAUUUCAUAAGAACAUUGAUCGUGAAUUACCGUAGGGUUUUGGGAUACUUUGCCUAUAUAAGGCGCUCAUAUACAUAGCCCAAAAUGACACAGCUCCAAAAAGCUAGCUAGCAGAAAACUCACACGAACACCUUAUCAAUUAACGAUUUAAUUGAUUGAGGUUUUCUCCACUGAGAUCCCUAACUGCAAAAUGGCCGAUCAGAAAAAAUACAUGGCAUCGGGACUUAGUCCUGAGAUUAAGCUUAAGAUGGGUGGCAACAGACCACGCAAAGAGUAUCAACCUCAGAAGAAUGGCCAGCAAACGACAACUGAUCCUGCAUAUGGAGCUCUCGUCAGGCCAGUUGAACCACCGAAGUCGUGGGAUAACACAAAAAAGAACAAGUUGCCUUUCAACCCUUCAACUAAUCACGAUAAUGGAACUUCGAAUGGCACUACGAAUUCACGUCGAUAAAAUUGAGGUCAUCUAGUUGUCUCCGAUGCUAGCUGAAGACUAUAUGCAUAUAAGCUCACUACUCAAAGCUCGUGUGAAUAAAUAAAGGUGUAAUAUAUAGGAGCUACAAAUAAAGGUUAUGAAAAAAAUUUCUAGACAACAGAUGCAUUUAUUAUAGUAUACUCAAUAAAAUUUGUACUCAUCCUUAUCAGGAUGUAUCAGACCCUUAUGCACAUGUUAAUUUCUUUUAGGAGUCAUACACAUACAUAAAUAAAGUUGGACAACCCUAUGUAAAUAGCUGCUGAUGAAUUUAUUCAUUCUUGUACA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
75.41%
ME_num:
MEP:
23.37%
HE_num:
HEP:
1.02%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
root
Tau :
0.90
Avg Expression:
1.52
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -7.91255187385775 | 1.22279124605241e-09 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -8.01504473491896 | 5.32619886772427e-10 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -8.16395892980334 | 2.04194723410631e-10 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -2.70983867700698 | 0.00153390798569742 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -7.4076389997024 | 1.55542561423751e-08 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -4.72673226867438 | 1.10568184074595e-07 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 1hA | -1.31370534069766 | 0.00504954978845839 |
| 8 | Azucena // root // control--/--Azucena // root // Al | 3.13958513166852 | 0.00234883437399858 |
| 9 | AzuNIL // root // control--/--AzuNIL // root // Al | 2.99102160772892 | 0.0465029481006604 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | -2.21888861171193 | 1.01906934552553e-05 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -7.31400757183468 | 1.32372385629886e-08 |
| 12 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 8.00085095523412 | 9.5760492068202e-10 |
| 13 | Nipponbare // root // "mock,1_day"--/--Nipponbare // root // "auxin(50CM_2,4_D),1_day" | 4.4225502162319 | 7.09047383856081e-05 |
| 14 | Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days" | 2.81583577356762 | 1.45158501119651e-05 |
| 15 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | -3.5834585560024 | 1.00387241612087e-08 |
| 16 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // gibberellic acid (GA) | 7.16859248908854 | 0.00419260416516769 |
| 17 | Vialone_Nano // root // control--/--Vialone_Nano // root // 100 mM NaCl | -4.91883570515061 | 0.000541116284805503 |
| 18 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -7.0161157408418 | 3.76266999712664e-08 |
| 19 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -1.63298987771537 | 3.8078560199513e-05 |
| 20 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | 3.10184206405598 | 0.0160598559706466 |
| 21 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | 3.64006911582239 | 0.000166510516319099 |
| 22 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 1.90348329902764 | 0.000157358530060689 |
| 23 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -2.50542827559113 | 1.13662968995827e-05 |
| 24 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -4.56765454499993 | 1.07270736533213e-13 |