Chr:
Chr8
Start:
11321663
End:
11323564
Strand:
+
Ref_name:
LOC9271087
Sequence
(XR_001548074.2):
CAAAGGAUGCUUUCCUUCCUUCCCUCCCUGAUGAGCGAUACUUCGAUAUCGCCAGGAGAUAAUAAAUAAACACAUAAGUACAGUAUUAGUAUUACUCCGUACUUACGCGUGAAGAUGGAUAGCGAUGAUGCGUUGGCUCGUGUGUCAAUUAGGCUCGAUCGAGUUUGAUCGUUAACUUUGUUUUGGCGUGCGAAAAAUGGAGAUAUACUGUGGAAUUAGCUGCCAGGCCGGAGGGGAGAAAUCAUCGUGAUGAAGUACUUAUAUAUUUUUCACCUGGAGGAUAAAUAUCAUAUUAACCAGCUGUAUGCACUUCACGGUGCAGAGAAGGCGACAUGCAAGAUCUUUUGUCAUUGUCUCAAAGCAUAUUCGAUCGUUCACUCGUUCUUCAAUUACUUUUUAAUAUAUAGUAACAAAUUAACUAACAAUCUAUCCUCUUUAUUUUUGCAGAUAUGUAUCGGCGCGCAUUAUUAACGAUUAACGUGGGUUGUGGUUCAAAACCGGAUGCCGCCGUUGGUGAUAUAUAUUUGGAUACACAAGACAGUCGGCCAUAUAUAUCGUCUUUAGGCCACACAUAUAUUAUAUGUAUCCCAGUAGCAAAAACAUAUUUUUCCUUUUUGCAAAUUACAAGCUAGCAUGCAUGUAACAAAUUCUUUUUUUAAUAGAUAAAAAUUCAUUCUCGCAUUUGUUUUUCCCAUGUCAUCGUCAUUAAGAUUACAAAACAUUUUAGUGAAUAAAAAAAGAGGAACCGCUGCUGACUGCA
Sequence
(XR_003243722.1):
UGCAAAGGAUGCUUUCCUUCCUUCCCUCCCUGAUGAGCGAUACUUCGAUAUCGCCAGGAGAUAAUAAAUAAACACAUAAGUACAGUAUUAGUAUUACUCCGUACUUACGCGUGAAGAUGGAUAGCGAUGAUGCGUUGGCUCGUGUGUCAAUUAGGCUCGAUCGAGUUUGAUCGUUAACUUUGUUUUGGCGUGCGAAAAAUGGAGAUAUACUGUGGAAUUAGCUGCCAGGCCGGAGGGGAGAAAUCAUCGUGAUGAAGUACUUAUAUAUUUUUCACCUGGAGGUAUGUUUUAUUUGCUCUUUGUCAGGAAAUCUAAAUUACUUGUCGUUUACGCCGGUGUGAAGGGUUCUGAGAUUUGAAUGUUUGUCAAGUAGUAUAAUUUAUGCCGCUAUCAUGCAUGGAAGGUUCUGGUGAUUUUUACAUGCUUGUCAAGCUGGCAGAUACUGCACGCCUUUUCCCCCCCUGAUUUGCAUGUAGUAUUGUUUCGGUGUUCUCAAUUUAUUUCCGAUUUUCAGAGCGAUACGGCGUCUUAUAUUUACGUACUUUCUCUGGUAAAAAAACCAACUUAGUUUAGGAAGGGACGUGACUCCUCCUAGCUAGUAUUGUUUUGGUGUUCUCAAUUUUUUUCCUUGAUUUUCAGCGUGGCACAGUGUCUUGUAUAUACCUUCUCCCUCCGUUAAAAAAAGCCAACAUAGCUAGGAGGGGAUGUGACCCCUCCUAUUAUUGUUUUGGUGUUCUCAUUUUUCCCUUGAUUUUCAGCGCGGCACGGUGUCUAUAUACAUACUCCCUUUAUCAAAAAAAAAAAAAGCCAACGUAGUUAAGAGGGGAUAUGACCCCUCCUAGUAUUGUUUUGGUGUUCUCAAUUUUUUCUCCUGAUUUUUAGUGUGGCACGGCAUCUUGUAUAUACGUAUUGCCUCCGUCCAAAAAAAAGCCAACAUAGCUUAACUACGUAUUGACAUCUUGUCUCAAUUUUUUCUCCUGAUUUUUAGGACGUGACCCCUCCUAGUAUUGUUUUGGUGUUCUCAAUUUUUUCCUUGAUUUUUAGCGCGGCACGGCGUCUUGUAUAUACAUACUCCCUCAGUGAAAAAAAAAGGUUAUACUAGAAGGUCUCGCAUGCUCUACUUGGAUAAAUAUCAUAUUAACCAGCUGUAUGCACUUCACGGUGCAGAGAAGGCGACAUGCAAGAUCUUUUGUCAUUGUCUCAAAGCAUAUUCGAUCGUUCACUCGUUCUUCAAUUACUUUUUAAUAUAUAGUAACAAAUUAACUAACAAUCUAUCCUCUUUAUUUUUGCAGAUAUGUAUCGGCGCGCAUUAUUAACGAUUAACGUGGGUUGUGGUUCAAAACCGGAUGCCGCCGUUGGUGAUAUAUAUUUGGAUACACAAGACAGUCGGCCAUAUAUAUCGUCUUUAGGCCACACAUAUAUUAUAUGUAUCCCAGUAGCAAAAACAUAUUUUUCCUUUUUGCAAAUUACAAGCUAGCAUGCAUGUAACAAAUUCUUUUUUUAAUAGAUAAAAAUUCAUUCUCGCAUUUGUUUUUCCCAUGUCAUCGUCAUUAAGAUUACAAAACAUUUUAGUGAAUAAAAAAAGAGGAACCGCUGCUGACUGCA
Sequence
(XR_003243723.1):
UGCAAAGGAUGCUUUCCUUCCUUCCCUCCCUGAUGAGCGAUACUUCGAUAUCGCCAGGAGAUAAUAAAUAAACACAUAAGUACAGUAUUAGUAUUACUCCGUACUUACGCGUGAAGAUGGAUAGCGAUGAUGCGUUGGCUCGUGUGUCAAUUAGGCUCGAUCGAGUUUGAUCGUUAACUUUGUUUUGGCGUGCGAAAAAUGGAGAUAUACUGUGGAAUUAGCUGCCAGGCCGGAGGGGAGAAAUCAUCGUGAUGAAGUACUUAUAUAUUUUUCACCUGGAGGUAUGUUUUAUUUGCUCUUUGUCAGGAAAUCUAAAUUACUUGUCGUUUACGCCGGUGUGAAGGGUUCUGAGAUUUGAAUGUUUGUCAAGUAGUAUAAUUUAUGCCGCUAUCAUGCAUGGAAGGUUCUGGUGAUUUUUACAUGCUUGUCAAGCUGGCAGAUACUGCACGCCUUUUCCCCCCCUGAUUUGCAUGUAGUAUUGUUUCGGUGUUCUCAAUUUAUUUCCGAUUUUCAGAGCGAUACGGCGUCUUAUAUUUACGUACUUUCUCUGGUAAAAAAACCAACUUAGUUUAGGAAGGGACGUGACUCCUCCUAGCUAGUAUUGUUUUGGUGUUCUCAAUUUUUUUCCUUGAUUUUCAGCGUGGCACAGUGUCUUGUAUAUACCUUCUCCCUCCGUUAAAAAAAGCCAACAUAGCUAGGAGGGGAUGUGACCCCUCCUAUUAUUGUUUUGGUGUUCUCAUUUUUCCCUUGAUUUUCAGCGCGGCACGGUGUCUAUAUACAUACUCCCUUUAUCAAAAAAAAAAAAAGCCAACGUAGUUAAGAGGGGAUAUGACCCCUCCUAGUAUUGUUUUGGUGUUCUCAAUUUUUUCUCCUGAUUUUUAGUGUGGCACGGCAUCUUGUAUAUACGUAUUGCCUCCGUCCAAAAAAAAGCCAACAUAGCUUAACUACGUAUUGACAUCUUGUCUCAAUUUUUUCUCCUGAUUUUUAGGACGUGACCCCUCCUAGUAUUGUUUUGGUGUUCUCAAUUUUUUCCUUGAUUUUUAGCGCGGCACGGCGUCUUGUAUAUACAUACUCCCUCAGUGAAAAAAAAAGGUUAUACUAGAAGGAUAAAUAUCAUAUUAACCAGCUGUAUGCACUUCACGGUGCAGAGAAGGCGACAUGCAAGAUCUUUUGUCAUUGUCUCAAAGCAUAUUCGAUCGUUCACUCGUUCUUCAAUUACUUUUUAAUAUAUAGUAACAAAUUAACUAACAAUCUAUCCUCUUUAUUUUUGCAGAUAUGUAUCGGCGCGCAUUAUUAACGAUUAACGUGGGUUGUGGUUCAAAACCGGAUGCCGCCGUUGGUGAUAUAUAUUUGGAUACACAAGACAGUCGGCCAUAUAUAUCGUCUUUAGGCCACACAUAUAUUAUAUGUAUCCCAGUAGCAAAAACAUAUUUUUCCUUUUUGCAAAUUACAAGCUAGCAUGCAUGUAACAAAUUCUUUUUUUAAUAGAUAAAAAUUCAUUCUCGCAUUUGUUUUUCCCAUGUCAUCGUCAUUAAGAUUACAAAACAUUUUAGUGAAUAAAAAAAGAGGAACCGCUGCUGACUGCA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
68.5%
ME_num:
MEP:
13.41%
HE_num:
HEP:
17.89%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
embryo
Tau :
0.93
Avg Expression:
38.22
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Baldo // leaf // control--/--Baldo // leaf // 100 mM NaCl | 2.98964693008418 | 0.00800206311524842 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -3.32985685626306 | 6.30516684839187e-94 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -1.34028649723817 | 1.10035765100654e-34 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -6.53144666109681 | 4.72164879788332e-113 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -11.2960583164203 | 1.73049853317992e-20 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -6.68859962353383 | 2.25947117487325e-67 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -10.7476174068961 | 5.39031434206478e-19 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -3.25968248218553 | 1.09017378109358e-123 |
| 9 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 5.58446075767098 | 1.98799397945134e-05 |
| 10 | Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 3.26010644997626 | 0.000901359723551377 |
| 11 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 4.16254836330801 | 0.00197528104123495 |
| 12 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 2.5581252151736 | 0.0332143921025094 |
| 13 | Nipponbare // root // "mock,1_day"--/--Nipponbare // root // "auxin(50CM_2,4_D),1_day" | 3.73081010667665 | 1.09583800465808e-05 |
| 14 | Nipponbare // root // "mock,14_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),14_days" | 3.36794785697229 | 0.0326741163860272 |
| 15 | Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days" | 3.51823463706527 | 0.0458883900742175 |
| 16 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | 2.05688120949928 | 6.81091761827685e-11 |
| 17 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP2286 | 1.54223200801079 | 0.00320751252715012 |
| 18 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | 1.62190056404287 | 1.86877246416618e-06 |
| 19 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | -3.40448014833654 | 0.0200997143388682 |
| 20 | 9311 // leaf // control--/--9311 // leaf // salt | 3.87404727906825 | 1.54505194365196e-18 |
| 21 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -12.106306757759 | 5.77895696548013e-24 |
| 22 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -4.80643392895708 | 8.26361416992529e-164 |
| 23 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | 2.41506446050036 | 1.88450663876551e-09 |
| 24 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | 2.09751423951722 | 1.41352412238389e-12 |
| 25 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_RS105 | 1.46011587739704 | 0.000103953252522065 |
| 26 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | 1.19639402892635 | 0.00213344532975572 |
| 27 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7331 | 1.4192293043087 | 0.00497974036820468 |
| 28 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | 8.38089085005361 | 2.76340755049784e-30 |
| 29 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | 1.15155876062767 | 0.00321083766102576 |
| 30 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | 8.38081481744181 | 2.70272591276752e-30 |
| 31 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | 8.38069186953525 | 2.8032105360297e-30 |
| 32 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 12.9127270176842 | 1.8388234839919e-23 |
| 33 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -6.91403818820628 | 6.89214744996398e-82 |
| 34 | 9L136 // leaf // control--/--9L136 // leaf // salt | 5.12419282762877 | 7.06098107196968e-27 |
| 35 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 9.51218589115125 | 3.10162509595983e-60 |
| 36 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -10.2852874279776 | 9.04283984218226e-34 |