Chr:
Chr3
Start:
19742725
End:
19746717
Strand:
+
Ref_name:
LOC9271084
Sequence
(XR_001544276.2):
UCCAUCUCUGCCUCUUCCAGACGCGUCACCACUCUUCACCCACCAUUCCAGUGCCGAUCCAUCCGAGGGAGAGCAUCCUCGCUGCCCUUCUCCACUGUUUCUCCAUCGCCGGCUGCGAAUAAGACGAUGGCCGGAAUCGUUGAUGAGCCGCGGUCGUUUCCUCUUCUCUUGCGUUCCAUACUCUCCUCACCAUGCCGAAUAUUUCUUCUUUUGAUUUCAUCCUCUCUGGUGCAGCCAAUCGACGGGAACGCUGCUGUGCACACCGGAGCUUUGGAGCGCGCUCUGCGCACCGCCGCAGCGACAUCGUCGCUGUUGCCAUCAAUCUAGAUCAAGCCGGAGCGAGCCACCACGCCACCAGCUUCACCUCAACCUCCUCUCCAUUUACCCUCAAGAAACCCAUCCAAUGGCGCAGCGAUCUUGGAGGUCGACAUCGUGUUUUCCAACUCCGUUCAACCGCUUCCAUCAUCGAUUCCAUUCUCUCUGAUCGAGCAGCCGACGUCAUCCCUGGAGUUGUGCCAUGCCGCCAUGGAGCUUCGCCGUCGCUGUGAAUCUGCAGACAUCCCCAGCCUUGUCUAGCAUCUCGGUUUUAGACUUAGUCUUUGAGUGAUGCGGGUAAUCGACUGCUUCUUCUAGGACUUGAACUUA
Sequence
(XR_001544275.2):
UCCAUCUCUGCCUCUUCCAGACGCGUCACCACUCUUCACCCACCAUUCCAGUGCCGAUCCAUCCGAGGGAGAGCAUCCUCGCUGCCCUUCUCCACUGUUUCUCCAUCGCCGGCUGCGAAUAAGACGAUGGCCGGAAUCGUUGAUGAGCCGCGGUCGUUUCCUCUUCUCUUGCGUUCCAUACUCUCCUCACCAUGCCGAAUAUUUCUUCUUUUGAUUUCAUCCUCUCUGGUGCAGCCAAUCGACGGGAACGCUGCUGUGCACACCGGAGCUUUGGAGCGCGCUCUGCGCACCGCCGCAGCGACAUCGUCGCUGUUGCCAUCAAUCUAGAUCAAGCCGGAGCGAGCCACCACGCCACCAGCUUCACCUCAACCUCCUCUCCAUUUACCCUCAAGAAACCCAUCCAAUGGCGCAGCGAUCUUGGAGGUCGACAUCGUGUUUUCCAACUCCGUUCAACCGCUUCCAUCAUCGAUUCCAUUCUCUCUGAUCGAGCAGCCGACGUCAUCCCUGGAGUUGUGCCAUGCCGCCAUGGAGCUUCGCCGUCGCUGUGAAUCUGCAGACAUCCCCAGCCUUGUCUAGCAUCUCGAUGAUUGCUUAAACGGUGAAGAAGUAAUUUAGGUGCUAACAUUUUCCUGAUUCAAGGCAAGUCCCACCUCCAUCUCUUUGAUCACUUUGAACCUAUGUUUUGGAGGUUAUUGAAAAUGUUUGCAAAUCUUGCAUGUGGAUUGUACACUAAUAAAUUAAAAUUUUGUUAAACUUGUUAGAUAAACUCCUAUUAUUUG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
36.79%
ME_num:
MEP:
44.92%
HE_num:
HEP:
18.09%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.90
Avg Expression:
89.72
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -6.57888694383709 | 1.75999244979361e-51 |
| 2 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | -6.59953344556147 | 9.6288360675584e-05 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -3.29294904404216 | 4.58880571822606e-65 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -9.52962296044154 | 1.07083220747475e-19 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -10.3816534039662 | 2.60967208868484e-17 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -7.45522956674002 | 2.88567059256589e-28 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -9.83684790505005 | 5.54423647727404e-16 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -5.00104956924625 | 5.06358670980786e-86 |
| 9 | Nipponbare // shoot_apical_meristem // 0_days_after_shift--/--Nipponbare // shoot_apical_meristem // 12_days_after_shift | 1.84950393623242 | 0.0353646193169073 |
| 10 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 1.83971304449399 | 0.000429495042867341 |
| 11 | Nipponbare // root // "mock,14_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),14_days" | -3.05377481819945 | 0.0237625416516422 |
| 12 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 1.61239822511229 | 0.00289844027147395 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -9.42378794689167 | 1.0265600057793e-20 |
| 14 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -8.49729685329969 | 7.31052399638869e-37 |
| 15 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | 4.44796550702156 | 1.70925430048892e-28 |
| 16 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | 4.44772239399856 | 2.2337059055206e-28 |
| 17 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | 4.45207346145806 | 1.99785333303025e-28 |
| 18 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 6.05882174596637 | 1.58795276887523e-66 |
| 19 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -1.11699536005634 | 0.00298755649267986 |
| 20 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -1.01621270477225 | 0.0436925560877845 |
| 21 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -8.66366226801082 | 1.56947251575523e-23 |
| 22 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 6.21420062601271 | 1.30705419773027e-35 |
| 23 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -10.8518044724759 | 2.29090442826026e-19 |