Chr:
Chr6
Start:
16307586
End:
16309651
Strand:
-
Ref_name:
LOC9270989
Sequence
(XR_001546466.2):
AAAAGAUGUCGGCACCUGCCCCAAUCCAUCCGUGGCAAACCUCUUCCCCUAGCUUCGCGCACGCGUCUCCCCCUCUCUCGCUCGCUAUUUCCCUCGUUCGCUGCACGCCCCUCUUCCCUCCUCCCUAGCGCCACGCCGCCCCAGCCCACCCAUUGAUUCUCCCCGUCGCCGCUGCCCCAUCUGGAAUCCGCCGCGAGCCUGACUCCGGGCGACGACCGGACGAGGAGAGCUCGGCGGCGGGCAGACGCAUCCUUUUGCUCUCUCCCCUUCGACCACCUCCAAUGCCGCCGCACGCCGCAUCGCUUCUCCGCUCUCUCCCCCCUCCCCCAUGAACCACCGCUGCCACACCACGCCGUCCCAAUCCCCAGCCAGCCAUCGCCGAAUCCUUGCUGUUAGGUCGCCGUCGCGGCUGUCUGAUCCUGCUCACGGGGCAGUUACUUAAUCGGCGGCUAGACGAUCAUAUGGCAACCUGAUCCAGUUGGCGAUGGCGGUUGCAAAUCGAUCCCGGCUAGAGGUGACCAGGAUUCAGUGAGGUUGAGGAGUUUGAGGGGAGCAACAUGAGUGAGGUCUUCGAGGGCAACAUAGUACUGUCAGAGAAGAAGAAUGUAAAUAGGCAUACAUGGAAGCACAUGAUAAGAUAUACUCCCUCCGUUUUUUAAUAGAUGACGCCGUUGACUUUUUCUCACAUGUUUGACCAUUCGUCUUAUUCAAAAAUUUUAUGCAAAUAUAUAAGAUAUAAAUCACAUGAGUGAGAAAACAACUCAUAACAAAAUAAAUUAUAAUUACGUAAACUUUUUGAAUAAGACGAAUGGUCAAACAUGUGAGAAAAAGUCAACGGCGUCAUCUAUUAAAAAACAGAGGUAGUAUUAAGUUAUAAGUUACCAUGGUUGAGAUUCUAGAAGUCUGAACUUUGGAAUAUUCAUUGACAAAAGGUAACUCUGAAAGUCAGAACUUUGGUUUGAAAGUUUGAAAGUGUGAAAUUCUGAACAUGCAGUGGCUAAUAUAUAUCGGUCGUCGAGGCGUGGUAAUUAUAUUGAAAUUUCCAAUCAAUUCUAAUAUGGUUGCAUAAUAAAUCACAUUUUAUCCCCCACCGGCUGGGUUUUAUUUCAAUCACAUUUUAUGACAAUGCUGAAAUCGAAAACAAAUAUUUUACAUUUUAUAUGUGCAGCCAACAAGUCAAUUCCCUGUUCUGUUGUUUCUGAACUCUCAUGUUGUGUGUUACUGCUACUGAUGAUAUUAAUGAUACAUUAACUAUUUCCUUUUGCCAUGUAGUAGUUCAGCCAAAUUUUGCUCAAUCAAGUUGUUAUCUCAAGCUAAUUUUAGAGACAGGUUUGGAAAUGCAUUUAGCAGUCAAUUAUGUACUAUGCUAACACAUUGACCAAUUAAUAAAUUGUUGCCUUCUCCAACAAAUACAUGAUACAUUUGCUAUUCUAUACUUUCUCAUAGUUGCUCUGAUUUUCCAAAUGGUUUCGAUUGAGCUUCUAUCAGGUUUUCAGAAUCUUAGCCGAAACUACAAGAGAAGGCCAUCUAUGUCAUUGCUAUCAUGCAUCAUCAAGUACACCUUUUUUUGUCUUGAUCUGAUGUUUUCAUACAAAAACGAAGGAUUAUUUACAUGUCAGUGGUGAUAGCAGAACAUAUAUCAAAUCGAACCAGCGUUGGCAUAUUUGUUUAGUUUUAAUGCUGUCAAACAGAAUUUCCUCAACAUUUAUAGUCACUCUCAUCUUGGGGUUGAUCUUCUUCUUCUUCUUCUUCUUCUUAAGUUAUUUCUAGCUGGGCUUGUAAGAUGAUUUCGUGAAACUUUUUCAUGUGCGUUUAUUCAAUGGAGACAUGUUUCAAGAUAAUUUUGUCUGGAUGA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
1.02%
ME_num:
MEP:
27.64%
HE_num:
HEP:
71.14%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
anther
Tau :
0.83
Avg Expression:
50.32
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -2.72248110370477 | 4.35048939088619e-26 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -2.38111953547257 | 4.46338065522887e-24 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -2.43046270213469 | 6.76878490158386e-24 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -1.78417725494874 | 3.21819322796625e-10 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -2.17213574718903 | 1.50376726585351e-14 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -2.21230587275605 | 2.31111714596272e-17 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -3.13233085150985 | 2.06433185474683e-36 |
| 8 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 1.01233476373035 | 2.95723239566169e-08 |
| 9 | BR-IRGA_409 // spikelet // control condition (29C) for 7 hrs--/--BR-IRGA_409 // spikelet // high temperature treatment (38C) for 7 hrs | 1.0625658033665 | 1.38661801529807e-05 |
| 10 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | -1.93363582499977 | 2.82757568057383e-10 |
| 11 | 9311 // leaf // control--/--9311 // leaf // salt | 1.01687089495697 | 0.0138181445561968 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -2.02192951933714 | 2.9514237386169e-20 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -2.65953918230149 | 2.12132955257723e-32 |
| 14 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | 1.422025744437 | 2.16631235040568e-06 |
| 15 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | 1.42364715116839 | 2.10397434187932e-06 |
| 16 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | 1.42184990895612 | 2.20093630381471e-06 |
| 17 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Watered;Short_Day | -1.10044796657996 | 1.83201655729205e-06 |
| 18 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -3.40062981030617 | 7.09191247278609e-31 |
| 19 | 9L136 // leaf // control--/--9L136 // leaf // salt | 1.35708470186698 | 1.00553743181741e-06 |
| 20 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 1.21102453857914 | 5.06395996920573e-06 |
| 21 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -3.29294599835049 | 8.03475384168791e-44 |