Chr:
Chr1
Start:
15759547
End:
15763124
Strand:
+
Ref_name:
LOC9270975
Sequence
(XR_001545165.2):
UUGGGAGUGAGAAGAUCAUUGACACCUAAAUUGGUUAAGACAUGCAAUUGGUGCAUUAUUUAUGCAUUUUGUCGAAUUGUGUUGGACCAUUAUUUGAAAUAAAUAAAAUAUUAGCGUAAUUACAAUCUUUUCAACUAUAUAUUGUGCACCAUAUGACUCCGUCCUUGAUGGUUACUAGAAAAUAACCGCGGCUUUGCCUCACAUUAGUAUACAUAGGCCAGGUCGAUUGGAUGGACCCAGUGUAGUUAUAAAGCCAGGUAUAUAAGAAUUAAUCAUAACUAAAUCUGUAUAUCCAAAAAAAAGGGCUACAUAAUCACAAAACUUUACAUUCAACUUACCCGAUAAUCUAGUUUUACAUACCAUCAAACUCAGUUGCUUUUAUUACUGACAAUGAGAGAUCAACUUUGUUUCCCCUUACAAAAGCAAUAAGAGGUUCAUAUCAAAUAUGUUUUCCUUACAAAGAUAUUACAUGAUCAAUACUUCGAGAUUAGCAUCAAUGGUGAAAUAAUGAGAUUUAACUAUUUGUAAUGAAUAGAAAGUAAGACAAUGUUUUCAGUGAAGAUAAUAAUAUAACUUAUCACCGAAUCCAUCGUCUUGUGAUAUCUCAUUUACCACAGCCUUGUUUGGCACGAGCAUUGCUCUUUCACUGAAUUGUACAGUGGUUAAAGUCCCAGUUCUGCACCUGCAUUUCUCAGUCCCAGCACUCUAUGUCAACAUAAGAAAAUGCAAAAAAGGCUAUGACACUACUGAAAAAUCGUUUUUUCGUGACUGCCCCACAGAUUUCGUGAUGGCGACAUAAACACAGUCACCAAGAAGACAUAUCGUGACAGGCAUUAGAACACCAUCACGAAAUUGGGUGUUUCGUGACUGGGAAGAGCAGCCCGUCACCGAGUUAUAGAGUUGGUGACGGUGCAGUAAUAUAAAGCCCUCACUAUACUAUGCGAUGGACUUAAAUGGGCCAAGCUGCUCUGCCUCUGUCUGAAACUGUGAACCACCAAAAACAGAGUGCUCUUCUCGUUCCCCAUGGCUCUUGCCCUAGUGAGCUCCACGCCUCCACCUCGACGCCGCGACUCUGCUCGUUGAUUCAUCGCCGGUAGUGAUGCCGGCGAAGGAGCCCGUACAUUCUCACCUCACCGUUGGUCUUGCCUCCCUUGCUCUCCUCUCUGACGGGCGUGCCGCCGCUGCUCUCCUCACGGUGGGUUUCGCCGCCGUCCCUGUGUCCUGUCCGUGGGUCGCGUCACCAUUGUUCUUCUCGCCGUGAGGUGUACUAAAAUUAUACUUCAUUUUUCUCGUACACUUGAUCCUAGAGCGAGUUUACUGCAGAUCAACGACAUCACCUGAAGUAUCUGUUGAACAUCCACAAGACUGUUCUAAUCAGUUUGAAGAAUGGGACACAGAGGAAGACUGCUGUUUUUGAUGCAUCAGAACUAGAAUUUUGAUAAUUGUAGAAUGGUUCUUUUAUGGAAAGCUCAGAAGACUUACUUUUUUCAAGUGGAGCUUGCUUCAUGAGCGGCCACCGAAGGCUGCUUCCCUCUAUUCUAUGGCAUUAUAUUGGGCUUGUCACUUCAAGAAUUGUUGGACUGAUACAAGACUUGUGUAGAAAUUUGUAGUGCAUAAUUAAAUAUUGUUUUUCUAUGAAUUAUGUAAGGACUCACGAUGUUCAAUGCUAAUAUAUGCUUUUGUGAGUUUGAAUUUGGACUCGGGUAAAAUAAGUGAUUUUGUUGUA
Sequence
(XR_001545166.2):
CAGUGUAGUUAUAAAGCCAGGUAUAUAAGAAUUAAUCAUAACUAAAUCUGUAUAUCCAAAAAAAAGGGCUACAUAAUCACAAAACUUUACAUUCAACUUACCCGAUAAUCUAGUUUUACAUACCAUCAAACUCAGUUGCUUUUAUUACUGACAAUGAGAGAUCAACUUUGUUUCCCCUUACAAAAGCAAUAAGAGGUUCAUAUCAAAUAUGUUUUCCUUACAAAGAUAUUACAUGAUCAAUACUUCGAGAUUAGCAUCAAUGGUGAAAUAAUGAGAUUUAACUAUUUGUAAUGAAUAGAAAGUAAGACAAUGUUUUCAGUGAAGAUAAUAAUAUAACUUAUCACCGAAUCCAUCGUCUUGUGAUAUCUCAUUUACCACAGCCUUGUUUGGCACGAGCAUUGCUCUUUCACUGAAUUGUACAGUGGUUAAAGUCCCAGUUCUGCACCUGCAUUUCUCAGUCCCAGCACUCUAUGUCAACAUAAGAAAAUGCAAAAAAGGCUAUGACACUACUGAAAAAUCGUUUUUUCGUGACUGCCCCACAGAUUUCGUGAUGGCGACAUAAACACAGUCACCAAGAAGACAUAUCGUGACAGGCAUUAGAACACCAUCACGAAAUUGGGUGUUUCGUGACUGGGAAGAGCAGCCCGUCACCGAGUUAUAGAGUUGGUGACGGUGCAGUAAUAUAAAGCCCUCACUAUACUAUGCGAUGGACUUAAAUGGGCCAAGCUGCUCUGCCUCUGUCUGAAACUGUGAACCACCAAAAACAGAGUGCUCUUCUCGUUCCCCAUGGCUCUUGCCCUAGUGAGCUCCACGCCUCCACCUCGACGCCGCGACUCUGCUCGUUGAUUCAUCGCCGGUAGUGAUGCCGGCGAAGGAGCCCGUACAUUCUCACCUCACCGUUGGUCUUGCCUCCCUUGCUCUCCUCUCUGACGGGCGUGCCGCCGCUGCUCUCCUCACGGUGGGUUUCGCCGCCGUCCCUGUGUCCUGUCCGUGGGUCGCGUCACCAUUGUUCUUCUCGCCGUGAGGAUCCUAGAGCGAGUUUACUGCAGAUCAACGACAUCACCUGAAGUAUCUGUUGAACAUCCACAAGACUGUUCUAAUCAGUUUGAAGAAUGGGACACAGAGGAAGACUGCUGUUUUUGAUGCAUCAGAACUAGAAUUUUGAUAAUUGUAGAAUGGUUCUUUUAUGGAAAGCUCAGAAGACUUACUUUUUUCAAGUGGAGCUUGCUUCAUGAGCGGCCACCGAAGGCUGCUUCCCUCUAUUCUAUGGCAUUAUAUUGGGCUUGUCACUUCAAGAAUUGUUGGACUGAUACAAGACUUGUGUAGAAAUUUGUAGUGCAUAAUUAAAUAUUGUUUUUCUAUGAAUUAUGUAAGGACUCACGAUGUUCAAUGCUAAUAUAUGCUUUUGUGAGUUUGAAUUUGGACUCGGGUAAAAUAAGUGAUUUUGUUGUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
34.96%
ME_num:
MEP:
63.82%
HE_num:
HEP:
1.02%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot_apical_meristem
Tau :
0.84
Avg Expression:
5.38
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 2.86299589797061 | 1.78519891299729e-07 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 2.92379705209389 | 8.86529628615365e-09 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 1.56961224697153 | 0.0220542062550034 |
| 4 | Vialone_Nano // leaf // control--/--Vialone_Nano // leaf // 100 mM NaCl | -1.98199629389875 | 0.0377527550910146 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 2.32302110664645 | 4.65584817425348e-05 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 2.17808210199476 | 0.000129247715749335 |
| 7 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -1.69584208593635 | 0.0125955331477894 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 2.10274194016868 | 0.000976686026705118 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 1.33223064094605 | 0.0422779574347629 |