Chr:
Chr7
Start:
16766302
End:
16769598
Strand:
+
Ref_name:
LOC9270929
Sequence
(XR_001547229.1):
UUGGUCCACCACCCUGAGCAACACACCGCUGCCUCUUCUCGACUGGAGCGGCGCCCAAGCCGCCGCUGCUCGUCCCGUCGCCCGCCGGCGCGGCACACCGCAUCUGCUCGCGCCGGCGCCUCACGUCGCUUCAGCCUCCUCCUCUCGCCACAAAUGACGCCGCCUCCUCUCACCGUAGAUGCCGCCUCUCGUCAGAUCUGACGGAGCUCAACAUCGGUGCGGCCUUCUCCGUUCGGUCUCCACCAUCCGGCCACUGCGUCUUCCCCAUCAAGAACCUCAAGGACCUCGUCAUCUUCUACUACCUUGUCUAGGUCAUGGAGCUACUAUUAUUUGGUGAAGAUCGAAUGGUGGCAAAGAUAGGACAACAAUGCAUGCAGUUACCAUCUUCAUUUCUUAAAUUUAUGGACAAAUCAGAUUUUGGGACCUGGGAACUUAGUUUGUGGUUGUACUCAAUGUUCUAGGUGUUGAUGUCCUUUGCUUCCGAUUUUAUUUUACCUUACUGUGGUGAUGUAUAAGAAAAACUUCUCAGUGGGCUCUUUGCUAAACACUAAAAUUUAAAUGCUUGUAAUAUUGUUUGGAGGGCACAGAUUGACUUACCACAUGUGAAUUUGUCAACUGAUACAAUGCAUAGCAGUGUUAAUUAUCGUUUUAAAAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
2.85%
ME_num:
MEP:
0.2%
HE_num:
HEP:
96.75%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
root_elongation_zone
Tau :
0.61
Avg Expression:
256.78
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 1.39161910607375 | 3.74588299181422e-47 |
| 2 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 1.39738245956862 | 0.000128511475805409 |
| 3 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 1.17125225397999 | 8.25040293840252e-15 |