Chr:
Chr8
Start:
16074226
End:
16077177
Strand:
-
Ref_name:
LOC9270915
Sequence
(XR_001548063.2):
CGCUGCGUGUCCAUGUUCCCAGCCACACACGCAGAGAAGGGAGAGAGAGUGAGAGACUAGACUGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGGGGAAUGAAUUGCCCAGUGCUGAUGGUAGCGAGCUGCAAUCGGCGACGACGCGCAGCAUGGCCGCAAUGCAGUCGGCGUAUUCUCCGGCGAACUAACGGCGCCCCUAAGCUUGUUGUCUCCUCCGGUGGAACUGCAGUCGGGAAGGGAUUUGCAAUUUGUUUUGUCAGUGAGGCAAGGAUGGCUCUUCCCUCUCCUAGGGCGAGGAAGCCGGGGAGGUAGUCGUCAGCGAGGCUUCUACGGAGGCUUUUGUGGCGGACGGUGAAGCAGUCAUGGGGCUUCUCGUCCUGGUUGAUGGAGAGGUAGGAGACCUGGAGCUAUUCCUAAAGAACAUUGGCUUUGCCUAGCAGGAUGCUGCCACUGCGAAUGCUACUGCUAGGAAAGGGACUUUGAAAGUGGAAAUCUGAAAGUGGCAUGGAUUUUCAUCAUGUGAAAUCAAAAUACCUCUUGUAUCACCACGUAGAUCUGAUCUGACAAUCAAAGAGAGAGUCAACAGAAUUCUGGAUUUAAAGAAACCAAAUGAAGAUGACAAAACAUUCCUGAGUUAGGAACUUUUGUUUUCAGAUAACAAAACUUUUCUGGGACCGUGGGCUUUUGUUUUCAGUGGACAAAAUGUCGUGGGCUUUUUUUCUCCACCCAAAACGGGCUGUUGGCUGUGGCCCAAUUUUGUGAGAAAUAGUUAUGUCACCCAAAAUGUCCCAUUUGUAAUUUUGCUAGUAAAUUUGUAGGUGUAAUGCGUAUUUGUGCUAGUUUCUAAAAGUAUUUUUAGUUGGGCUUUUGUAAGUUAGCUCAGUGCUUUAAUGCCUUUUUUUAAGCCCAACAAAACAUACAGAAAUAUCUUGUGCUGGGCUCUUAUUUUCAGCCGAACAAAUCAGGCAUGAAGCCCAAAUCCA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
30.08%
ME_num:
MEP:
23.17%
HE_num:
HEP:
46.54%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
2nd_leaf
Tau :
0.67
Avg Expression:
11.81
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | -8.29754860592917 | 8.21946192993762e-09 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -1.83632809557722 | 3.60030973443306e-09 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -1.39755482909163 | 1.54212863492479e-07 |
| 4 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | -5.51394085989098 | 0.0313354134865966 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -1.23751235791581 | 1.61339289933272e-08 |
| 6 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -1.59626818387178 | 2.34052006481875e-08 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -1.38019054995099 | 4.96083956443113e-08 |
| 8 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -1.59254902206837 | 8.29539466796876e-11 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -2.16016089047231 | 3.76997498273262e-21 |