RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNC9270813

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr7

Start:

2569423

End:

2570721

Strand:

-

Ref_name:

LOC9270813

Sequence
(XR_001547433.2):

GUACUUCGGUUACGGAGGAGAUUUUUUUUCUAACAAAUAAACUAAUAAUUAUUAUAAAGGGAACAGAUCCCCGGUGGGGCGAAGACCGAAACCCUAGCCGCCGCCUCCGCCGUCGCCGUCGCCGUCGAAACCCUAGCCGCCGCCUCCUCCCGAUCCGACCGUGUCGCCAUGGCCAUGCGCUCUCUCCUCACCAAGCUGCGGAUCCCGGCGGCCGCUUCCCGCCGGACUCUCCCGCCGUUUCGCUCUUCAUCCACCGCCCCUCAGGCUAAGGGUAAGCUUAGCAGCACUGCUACUGCCCAAGAUGGCACUCCAGUUCCUGGAGAGGGCAGGCGCAUACUUGAACAGAUUAUGGAAGAAGGGGACAAGCGCCAGGGGAAGCUGAUGUGGUAUGAAAUCAUUGGCAACUUCAUCGCGUUCAAUGCUACACUCUAUACUGUCUACCUUCUAUAAUAUGAAUAGGUUCAGGAACAACUUUAUUCAAAUACUGUGAUGCCAUUUGGAGACAUUUCAAUGAUGUUCGUUCCACCAUUUCGAGGAGAAUUCACAAAUCUAUUACUUCAA

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

217

LEP:

44.11%

ME_num:

183

MEP:

37.2%

HE_num:

91

HEP:

18.5%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

carpel

Tau :

0.84

Avg Expression:

51.02

Tip: OSA-LNC9270813 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA-4.367107028314440.0240193170904229