Chr:
Chr9
Start:
11448734
End:
11459869
Strand:
-
Ref_name:
LOC9270810
Sequence
(XR_001540173.2):
UCCGCCCACGAUGCCGGAGGCCAAGCCCGACGAGCUCGACUGCGGGGGCUUCGCCUCUUUGGCUCCUCGCCCGCCGGCGGCGGCGGCGAUCGAGUUCCGCCGAGUCCACCACCACUCCGCGCCGCUAGCUACCCACUUGUUCCACCGACCACAUCGCGCGCCCACCUACGAACUCCGCCCGCCGGCAUCGAUGGGGGCUUCGACGAACGCCCGCGAGCGCGCCAUCGCUGGCCGCAGUACGAUCCGCACGCCGGAGAAGCGUUCUUCAGUUGCCAGUUCGUGCAGAUCUGUCUCUCAGGCAAGCUAGAUUUAUGCAGCAUGUUGAUCCAGAUUAUUACAGGAGAAACUUCCACAUUCCUGAAGUCAUGGUACAAUUGGUAUUUGGAUGGAAGAUAAGGAAAUGUGAUGGCACUCAAUGCUGAGAAGAAACUUUUUUUUCAUGCGAUGGACUGGUUGGCCUUGGCUGCUGGAUACAAUGAACUCUUCAUCUGCCUCAUCUCCAGUGAUGAUAUGAAGGGAAUCCCACUGCCAAUGUCCAUCAAGCAAACUGAUAUGGAGUUCACCUCUGCGACAACGAUCACCUCAGCGAUUUGUUGCAGGAGAUAAGGUGUAGCAGUUUCGACCUCCAGUGGGGAAACUUCUGAGGUAGCUGGAGCCACUGGAAAGCCCACAAUCGAUGCUUAUAAAUCCUUCAUCUACAAGGGGAGGGAGUCAGCUGAGCCAUUUGCACUCCACAUGUUAAUUCGCAGGUUAGCCAAUAGAAUUAUAAUUAUAGUCAUGGAAGAAUAAUCCUUCCCAUAAAACGUAUUGGCACCAAAAAUAUGAAAAUUUAUCAGGUACAACUUGGCAAAAUGAAAAUGAUACGGUAGGUUUGUUUGAGUCUGAAAAUGGUUCCAUGCUAUGAGAUGUAUAUUGUAGUUGGAAUAAUUCUGUGCUUUGCAAGGGGCUUACAGUAUGGAUUUUUUUUUAAAUAUGGAGGAAAUUCAUUGCAUACGUUACUCUAAAGGAGAUGAUUCCCAAAAUAUGUAAUGGGCUCAUGGCUUUGUACUGAAGUCUCAAAUUUAAUGGAGGGCAAUUAAGAAGUAUUUCCUGGAAAGUAUAUUAGGGAAAAACCACGACACAAUACUCUGCUGCUGGUAUGAUGUCUCAGCAGUAUCACAGAGGUAUGAUGCCUCGAAGUAUUAUGAUACCUUGAGGGUAUCAUGAAGAUGGCACCGAUGUUUCUUGGUGGUAUUACUAAAGUUUUUUGAAGGUACCAUGCUUGGGUAUUGUCAUGUGGGGCCGCACCUAUACAAGGAAGGGCCGCAAGAUCAGGGGCGCUGAAGGCGCGCCGUCGACGCUGUAUACGCGAUCACGCGCGGCUGAGCAGGAUUAGCGCGUGGAUUUGAAAACAGAAGGAUCAAUCAGAUCCUUAGUAAUAGGAAUAAUUAGUUACAAUGAUUUGAUUAGCGCCAAGAAUUAAGGCCCGAGUGCCUACUUAAGUUUUGUAUUCAGAAUUUGGAAGGUAACGAGUUGAUCACAAACUUUCUAUUC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
2.85%
ME_num:
MEP:
56.3%
HE_num:
HEP:
40.65%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
anther
Tau :
0.53
Avg Expression:
9.49
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -1.21838148489657 | 6.66608706566831e-07 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -1.11301255768797 | 5.00841422505425e-08 |
| 3 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 1.65139044453846 | 1.08937296166082e-06 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -1.12663967479237 | 2.70047296012768e-10 |