Chr:
Chr1
Start:
13198365
End:
13199668
Strand:
-
Ref_name:
LOC9270788
Sequence
(XR_001544887.2):
AUUUAUGUGGCACUAGAAUUAAAAAAAUAUCUGUAGGACCCAUCUGUCAUUCACAUAGAAAAUGUAUUGUGGGCCCACACGUCAUCCUUUCUUUCCAACCCUUCUUCCUCCUCCAUCUCUCCCUUAUCUCUCUUUUCUUUCCCCCCUCGGCCAUGGCGGCUGUGGGAGAGACGACGGGUGUUGGAGCAGCGGCGGAGGCGAGCGGGCGAGGGCCGGAGCGGCAGCGACCUCCAAGUGCGGGAGCGCGGCGUGGCUUAGCCCAAAUUGACCGAGCGACAACCCAAUCGAUUCCAGGAGCGUCGAGCGAGCGCCGCCGCGGCGCCUCCCCCUGCUUACUGCUGCCCUCGCUUCUGCUCCUCGGUCCCGCACCUGCCUCCGCCUUCCCAGUCCGCGUGCUCCAUCGCCGCUGCUCCCGCAGCCCCGCGUGAGGCGUCCUUGGCGGAGGGCACGCUGUGGUGCGUUGUACGUCGCCGCGCUCUUGGAGCUUGGUCAACCCUCGGCAAGGCCGGCGAGCUGUUGGUCCGCCACCUCCCCUCCGCAAACCAGCGGGCGUCGCCGCUUCGGAGUUCCUCCCUGGGUGAUUUAUUUUCUUCAUGUACAUAAUCCCGGACGAGACCCGUGAUGGUGCUGGACAUGCCGGAAUCGUCGCCGGAGGCCUAGCAUCCGGGCAGAGCGAAGAAGGCAAGGCGGUGAAUCUUGACGCUGCUGCUGCGGUAAAGAGCGAUCUCAUCAUCAGUAGGGAGUGGAAAGCGGAGAUCGGGUGAGGGUUUUGGGAGUACGGCUCCGGCGACAUCCACCGGAGGAGAACCAGGUCACCGUGCGCUGCACGCUCAUCUCCGCAACCACCGUCACCGCCGCGUUGCCUUGGGCCACGACGCCAUCGAUCCGCAUCCGCCUCGGUCACCGUGGGAAAAAGAAGAAAGAAAAGAGAAGAAUAAAGAAAGGGAGGGGAGAAGAAAAUGUGACACCUACUAGUGGGUCCCACAUGCUGAGCCAGCUAGUUAGACUAGAUCAAAGCACCACGUCAGCGAAAACAUACUCCAAAACUAUCGAGGGAGUCAAAUUGCAUCAGUUUUAAUAGUUGAGAAAAUACAGAUAUCCGGUAUUACGGUUUAGGGGUACGAAUCAAAUUCGAUCACCAGUUAAGAGAGUCAAAGCGAACUUUUUUCCUUCCUAAGAAUGCUAUACGGCACUACCUGCUUCA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
17.48%
ME_num:
MEP:
58.74%
HE_num:
HEP:
23.58%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.76
Avg Expression:
10.76
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 1hA | 1.098826914589 | 0.0175462077302913 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | 1.21098202937008 | 0.00348637635288166 |
| 3 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.78619506943702 | 1.68118391374748e-11 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 1.70588263348258 | 2.49256530464101e-06 |
| 5 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // Paclobutrazol (PB) | -3.6952695080217 | 4.71514027888002e-07 |
| 6 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // gibberellic acid (GA) | -9.11312368324488 | 3.0685013381863e-10 |