Chr:
Chr2
Start:
6020619
End:
6021497
Strand:
+
Ref_name:
LOC9270773
Sequence
(XR_001543088.2):
CCUUGACCUCUCAUGAAUACUCAUUAUAGUAAAGUUCACCCCUUUCCAACCCCUCUCUCUCCCCACCAUCGGCUCAUCGCUGGUGAAGGAGCGCUGUCGGGCUUCUCCACGGAGACGAAUCACUCCCUGUUGGGCUUCUUCUCCCAGCUGCUACCUAGGAUGCCUCCAGAUCUGUGCAAAGAGAGGUAACGUCUGUCUACAUCGACAUCUCCGGCGAGGUCUUUCCAAGGAAGGCGGCCUCAUGCUUGAUCCUUGGCGACAAAUCUUCACUAGGUGGCUGGAGUUUUCAAGUUGCAUCAAAGAUGUCUCAACCUCCCACUCGUGGAGGACCGAAUCUGUAUGCCUCUUGGCUUCUUAUGUAGCUCACCGCGUUUCUUUUGCUUUCUUCACCAACAAAAUACAUCUAGUUGUUGUCUUUGGAGUAGCUAUGGUCUUUGUACUAAUUUCUCUCAAGAACAAUAGUAGAAAUCUCAAGUGGUGUUGCUAAAAUUUCACUUUGCUCAUCAACACCUUAGCCUCCAUACAUAGGAGGAAUCAUUAGGGAUUGAGUGCAUUCAGCUCACUUGGUUUCACCCUCCACCGGAAGUGAGCUUCAGAUCUUCUUCAUCGGUGACAAAGGCCAAGAAGGAGAAUGACUCGAUUGCUUUUUUUUUCUUUCUAAGUCCUUUUCUACAAAAUGUUGAGCAAAAGUGUAAUUUGCCCAUUCACAAGGGGUUUUUCGCAAAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
31.91%
ME_num:
MEP:
35.37%
HE_num:
HEP:
32.52%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
seedling
Tau :
0.80
Avg Expression:
10.91
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | -2.17836891019385 | 2.07941088145829e-05 |
| 2 | Nipponbare // root // "mock,14_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),14_days" | -4.89287870647967 | 0.0336895287967467 |
| 3 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | -1.30420844470092 | 0.0101111712316181 |
| 4 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | -1.50004527904477 | 0.000306684109735884 |
| 5 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | -2.33094082751745 | 9.03104385880881e-06 |
| 6 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -1.85912019800931 | 0.000126726227063173 |
| 7 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | -3.47008982726093 | 6.72101602594844e-10 |
| 8 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | -1.21478826879687 | 0.00404500019509086 |
| 9 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | -3.47020230306125 | 6.90785552481459e-10 |
| 10 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | -3.47029186170129 | 6.82276883453401e-10 |
| 11 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -1.90189609440474 | 3.17783694435926e-08 |
| 12 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -2.36216218014359 | 8.71578302197385e-17 |
| 13 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -1.62654782762826 | 1.36436799575254e-07 |