RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNC9270738

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr3

Start:

32328163

End:

32328943

Strand:

+

Ref_name:

LOC9270738

Sequence
(XR_001544731.2):

UUUACUUCUAAUAAUCCAGGUUAUAAUAAUUCUAAGCUGAAUAAAACAGGUUCUAUGUUCAAGAGUUCAUAUAGUCCCCAAACUAUAAAAUCGGGUAUUUAGCCCCUCAAACCUUAUAAUCCAGUCAUUUCAACCCCUAAGCUGUUUCACAAGGCAGUUUUGCAUACGUGGCGGGCUGAUUGGACCGUAUUUACCACUUCGUAACAGGAGGGAAAGGGAGAGUUCCUCUCGCUCUAGGGUUCAUAUUCCCCAUCUCGAGUUCUUCCCGCACGUCAGUAGCAGCGUCAAAUUCCGGACCUGGGGCGAGGCGACUCUAGCGCGGGAAAUCAUAGCAGCGGCGCUGGUGCGCAGCCACGGCGAGCGCGACGACCCCGGCGCCCGCGACAGGCUACAGGAUAAGUUCUGUGGCUGUCGGGGCAGGUGCAUGGGCUGCACGGCGACGCUCGACGCGCCGGCCGCAAGCACGGCAAGGAUGGACAGGGCCAAGUGAUAUGAACUGUAGAACAUGGUGAUAGAAAAGAAUUUUUUCAGUGUAAAUCCAUGCAUAUAGAUUAGGGAGGAAUGAAAUGUGUAAAAGAAGCUCAUCUAUUAUCCCUCUACUGUUGAGUGUAAUGUGGAGAUUGCCCAAGUGAUAUUGUAUAAUCUAGUAAGCAUAUUAUUAUGCAAUUCAAACGUUGUAUCCUUUUGGGAUUAUCUUAUUCGCA

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

160

LEP:

32.52%

ME_num:

308

MEP:

62.6%

HE_num:

23

HEP:

4.67%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

shoot

Tau :

0.68

Avg Expression:

3.46

Tip: OSA-LNC9270738 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342-1.29964892256540.034445762734764