Chr:
Chr12
Start:
12460355
End:
12465266
Strand:
-
Ref_name:
LOC9270599
Sequence
(XR_001541797.2):
AGACAAAAAAACCAGAAUCCAACUCAUUCAUCAACUCACUCUUACACCUACAUACUCAUUCAUCAAAUCCAACGGACGAGAAUCAUCCACCGCUUUAGAUCCAACGAACCAUACCUCCCUCACCUCCCACCGCGUACCGCUCCCAUCCACGGAAACCGCAUGCGCCAUCAUCGCCGAUCUCCUCUGCACCGCCGCCCACGAUUCGCCGCCGUCACUCACAAAUCGUGGCCGCCAGCCCCACACUGCGACGCCGCCCCUCGCCUCUCCACCGCGCCGCCACCCUACGGCGAUCCACCGCUGCCUCCGCCGAAGCCAAGUCACCCAUACUCGCUCCUCGAUCCUCCCGUCGCCAGAUCACCACCAGGCCGCUGAAACCGCCGAAGAAGCUGUCGGGCUCGUCGUAGCCAAGCCGAUCUCCUCCGUGCCGCCAGAACUUCAUCACCUCUUCUAGAAAUACGAUGCACACUGACAGAGAGAGAAAAGAGAAGAAGAAAAGCUGCAAAAGCCGGAAAAGAAUUGCGGAGGAGACCUCCUCCUAAUCGGUGGAAAAUAAAAAAAACAGAGAGAGUAGUUCUUGCUUCGCCUGCAAGGAAUCCUCUCCGCCCUGUGUUCCAAAAUUUUGAUAUGUGAUUUGAACCUUUGAAGUAGGACUACCCAACUAAAAUUCCUGACUACUCCUGUUCUGUCACUACACGCCUCCACAUCCCUACAUCCGAGGCUCCUACUCGGCGACUCCGAUUGGCAAUUGAAGGGUAUAUCCAGUGAGGUGUACCUCGCCAUGGACUGCAUCUGCGUCAUUGUCUGAGUGUCCACCUCGCUGAUCUCGUUCACGCCGCCAGGAUUGUGAUAUCAUGAGGACACAACCAUGAAAUUCAGCUCAUCUGGUAAGCUUUUGGAGGCAUGCAUUACUGUUACAGGGAUGGAAUAAUGAGAUCGCAUCAUCUUUUAUCAUGAAAUUUGAAGACUACUGACUACAGACCAUGCCAAUAUAAUUUCCUAUAUAUGCAACACAAUGCAGCUACAAGGAUAGGAUAAAGUUCAUUUGGUUUAUGUUUAGCAAGAGGACCUACCGAUUUGUCAGAUUACAGUUAUAUACCUUUUGCUUACCAUGAAGGCAUCCCCUUUUUACAUUUUAGUACGACGCUUCAUCUUACAUCGGGUUUUACUGGUUUAUAAUUUAUCAUUUAUUUUUUCAGCAUUUGAUUGAAUUUCUUGUACUAAAUCAUGUAAUUUUUAAUGUCUGUGGUUUUACAAGAACCUCUCCAACACCUUAAAGGAUGUUCUUUAGAAAUUAGAUGAUCUUCAAAGUCCACAUUCCUAGAGUCACUUGGGAGAGUACAAUUAGUGAACUAUUAGCAUACCGUACUUUUGAAUCAAUAUUCCUAUUUCUAGAGGCGAGAAAAAAGAAAGCAUGUCUAUUGUACUUGUAAUUACAUGUGAAUGACCCUGUAAAUUAUGUUAGGUCUCCAGUACUGUUGUAUGUGCUGCACUUAUUUUCCAGAUAACCCUUCUGAUAGCUCAAGUGAAGCUGAUCAUGAUAGCUCAAGUGAAGCUGAUCAUGCAACGAGUUUUAUGUGUUAGUAAGUCUUGUGUGUAAAUCAAUAUGCUGUGAGGUGCAAGUAUAAUUAAUGGAUCAACAUCAUUUCAUUUA
Sequence
(XR_001541798.2):
AUGAGAAAAAAGAAGACAAAAAAACCAGAAUCCAACUCAUUCAUCAACUCACUCUUACACCUACAUACUCAUUCAUCAAAUCCAACGGACGAGAAUCAUCCACCGCUUUAGAUCCAACGAACCAUACCUCCCUCACCUCCCACCGCGUACCGCUCCCAUCCACGGAAACCGCAUGCGCCAUCAUCGCCGAUCUCCUCUGCACCGCCGCCCACGAUUCGCCGCCGUCACUCACAAAUCGUGGCCGCCAGCCCCACACUGCGACGCCGCCCCUCGCCUCUCCACCGCGCCGCCACCCUACGGCGAUCCACCGCUGCCUCCGCCGAAGCCAAGUCACCCAUACUCGCUCCUCGAUCCUCCCGUCGCCAGAUCACCACCAGGCCGCUGAAACCGCCGAAGAAGCUGUCGGGCUCGUCGUAGCCAAGCCGAUCUCCUCCGUGCCGCCAGAACUUCAUCACCUCUUCUAGAAAUACGAUGCACACUGACAGAGAGAGAAAAGAGAAGAAGAAAAGCUGCAAAAGCCGGAAAAGAAUUGCGGAGGAGACCUCCUCCUAAUCGGUGGAAAAUAAAAAAAACAGAGAGAGUAGUUCUUGCUUCGCCUGCAAGGAAUCCUCUCCGCCCUGUGUUCCAAAAUUUUGAUAUGUGAUUUGAACCUUUGAAGUAGGACUACCCAACUAAAAUUCCUGACUACUCCUGUUCUGUCACUACACGCCUCCACAUCCCUACAUCCGAGGCUCCUACUCGGCGACUCCGAUUGGCAAUUGAAGUGUUUCCAUUCUUCUUAAAUUCAGGGUAUAUCCAGUGAGGUGUACCUCGCCAUGGACUGCAUCUGCGUCAUUGUCUGAGUGUCCACCUCGCUGAUCUCGUUCACGCCGCCAGGAUUGUGAUAUCAUGAGGACACAACCAUGAAAUUCAGCUCAUCUGGUAAGCUUUUGGAGGCAUGCAUUACUGUUACAGGGAUGGAAUAAUGAGAUCGCAUCAUCUUUUAUCAUGAAAUUUGAAGACUACUGACUACAGACCAUGCCAAUAUAAUUUCCUAUAUAUGCAACACAAUGCAGCUACAAGGAUAGGAUAAAGUUCAUUUGGUUUAUGUUUAGCAAGAGGACCUACCGAUUUGUCAGAUUACAGUUAUAUACCUUUUGCUUACCAUGAAGGCAUCCCCUUUUUACAUUUUAGUACGACGCUUCAUCUUACAUCGGGUUUUACUGGUUUAUAAUUUAUCAUUUAUUUUUUCAGCAUUUGAUUGAAUUUCUUGUACUAAAUCAUGUAAUUUUUAAUGUCUGUGGUUUUACAAGAACCUCUCCAACACCUUAAAGGAUGUUCUUUAGAAAUUAGAUGAUCUUCAAAGUCCACAUUCCUAGAGUCACUUGGGAGAGUACAAUUAGUGAACUAUUAGCAUACCGUACUUUUGAAUCAAUAUUCCUAUUUCUAGAGGCGAGAAAAAAGAAAGCAUGUCUAUUGUACUUGUAAUUACAUGUGAAUGACCCUGUAAAUUAUGUUAGGUCUCCAGUACUGUUGUAUGUGCUGCACUUAUUUUCCAGAUAACCCUUCUGAUAGCUCAAGUGAAGCUGAUCAUGAUAGCUCAAGUGAAGCUGAUCAUGCAACGAGUUUUAUGUGUUAGUAAGUCUUGUGUGUAAAUCAAUAUGCUGUGAGGUGCAAGUAUAAUUAAUGGAUCAACAUCAUUUCAUUUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
11.79%
ME_num:
MEP:
49.39%
HE_num:
HEP:
38.62%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
flower
Tau :
0.67
Avg Expression:
11.31
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | 1.60838507516442 | 0.00186493800601939 |
2 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | 1.60830808942783 | 0.00189074569140407 |
3 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | 1.60816794697893 | 0.0018773098951094 |
4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -2.04517990783858 | 5.70323175687182e-23 |