OSA-LNC9270599


Function Link


Basic Info

Chr:

Chr12

Start:

12460355

End:

12465266

Strand:

-

Ref_name:

LOC9270599

Sequence
(XR_001541797.2):

AGACAAAAAAACCAGAAUCCAACUCAUUCAUCAACUCACUCUUACACCUACAUACUCAUUCAUCAAAUCCAACGGACGAGAAUCAUCCACCGCUUUAGAUCCAACGAACCAUACCUCCCUCACCUCCCACCGCGUACCGCUCCCAUCCACGGAAACCGCAUGCGCCAUCAUCGCCGAUCUCCUCUGCACCGCCGCCCACGAUUCGCCGCCGUCACUCACAAAUCGUGGCCGCCAGCCCCACACUGCGACGCCGCCCCUCGCCUCUCCACCGCGCCGCCACCCUACGGCGAUCCACCGCUGCCUCCGCCGAAGCCAAGUCACCCAUACUCGCUCCUCGAUCCUCCCGUCGCCAGAUCACCACCAGGCCGCUGAAACCGCCGAAGAAGCUGUCGGGCUCGUCGUAGCCAAGCCGAUCUCCUCCGUGCCGCCAGAACUUCAUCACCUCUUCUAGAAAUACGAUGCACACUGACAGAGAGAGAAAAGAGAAGAAGAAAAGCUGCAAAAGCCGGAAAAGAAUUGCGGAGGAGACCUCCUCCUAAUCGGUGGAAAAUAAAAAAAACAGAGAGAGUAGUUCUUGCUUCGCCUGCAAGGAAUCCUCUCCGCCCUGUGUUCCAAAAUUUUGAUAUGUGAUUUGAACCUUUGAAGUAGGACUACCCAACUAAAAUUCCUGACUACUCCUGUUCUGUCACUACACGCCUCCACAUCCCUACAUCCGAGGCUCCUACUCGGCGACUCCGAUUGGCAAUUGAAGGGUAUAUCCAGUGAGGUGUACCUCGCCAUGGACUGCAUCUGCGUCAUUGUCUGAGUGUCCACCUCGCUGAUCUCGUUCACGCCGCCAGGAUUGUGAUAUCAUGAGGACACAACCAUGAAAUUCAGCUCAUCUGGUAAGCUUUUGGAGGCAUGCAUUACUGUUACAGGGAUGGAAUAAUGAGAUCGCAUCAUCUUUUAUCAUGAAAUUUGAAGACUACUGACUACAGACCAUGCCAAUAUAAUUUCCUAUAUAUGCAACACAAUGCAGCUACAAGGAUAGGAUAAAGUUCAUUUGGUUUAUGUUUAGCAAGAGGACCUACCGAUUUGUCAGAUUACAGUUAUAUACCUUUUGCUUACCAUGAAGGCAUCCCCUUUUUACAUUUUAGUACGACGCUUCAUCUUACAUCGGGUUUUACUGGUUUAUAAUUUAUCAUUUAUUUUUUCAGCAUUUGAUUGAAUUUCUUGUACUAAAUCAUGUAAUUUUUAAUGUCUGUGGUUUUACAAGAACCUCUCCAACACCUUAAAGGAUGUUCUUUAGAAAUUAGAUGAUCUUCAAAGUCCACAUUCCUAGAGUCACUUGGGAGAGUACAAUUAGUGAACUAUUAGCAUACCGUACUUUUGAAUCAAUAUUCCUAUUUCUAGAGGCGAGAAAAAAGAAAGCAUGUCUAUUGUACUUGUAAUUACAUGUGAAUGACCCUGUAAAUUAUGUUAGGUCUCCAGUACUGUUGUAUGUGCUGCACUUAUUUUCCAGAUAACCCUUCUGAUAGCUCAAGUGAAGCUGAUCAUGAUAGCUCAAGUGAAGCUGAUCAUGCAACGAGUUUUAUGUGUUAGUAAGUCUUGUGUGUAAAUCAAUAUGCUGUGAGGUGCAAGUAUAAUUAAUGGAUCAACAUCAUUUCAUUUA

Sequence
(XR_001541798.2):

AUGAGAAAAAAGAAGACAAAAAAACCAGAAUCCAACUCAUUCAUCAACUCACUCUUACACCUACAUACUCAUUCAUCAAAUCCAACGGACGAGAAUCAUCCACCGCUUUAGAUCCAACGAACCAUACCUCCCUCACCUCCCACCGCGUACCGCUCCCAUCCACGGAAACCGCAUGCGCCAUCAUCGCCGAUCUCCUCUGCACCGCCGCCCACGAUUCGCCGCCGUCACUCACAAAUCGUGGCCGCCAGCCCCACACUGCGACGCCGCCCCUCGCCUCUCCACCGCGCCGCCACCCUACGGCGAUCCACCGCUGCCUCCGCCGAAGCCAAGUCACCCAUACUCGCUCCUCGAUCCUCCCGUCGCCAGAUCACCACCAGGCCGCUGAAACCGCCGAAGAAGCUGUCGGGCUCGUCGUAGCCAAGCCGAUCUCCUCCGUGCCGCCAGAACUUCAUCACCUCUUCUAGAAAUACGAUGCACACUGACAGAGAGAGAAAAGAGAAGAAGAAAAGCUGCAAAAGCCGGAAAAGAAUUGCGGAGGAGACCUCCUCCUAAUCGGUGGAAAAUAAAAAAAACAGAGAGAGUAGUUCUUGCUUCGCCUGCAAGGAAUCCUCUCCGCCCUGUGUUCCAAAAUUUUGAUAUGUGAUUUGAACCUUUGAAGUAGGACUACCCAACUAAAAUUCCUGACUACUCCUGUUCUGUCACUACACGCCUCCACAUCCCUACAUCCGAGGCUCCUACUCGGCGACUCCGAUUGGCAAUUGAAGUGUUUCCAUUCUUCUUAAAUUCAGGGUAUAUCCAGUGAGGUGUACCUCGCCAUGGACUGCAUCUGCGUCAUUGUCUGAGUGUCCACCUCGCUGAUCUCGUUCACGCCGCCAGGAUUGUGAUAUCAUGAGGACACAACCAUGAAAUUCAGCUCAUCUGGUAAGCUUUUGGAGGCAUGCAUUACUGUUACAGGGAUGGAAUAAUGAGAUCGCAUCAUCUUUUAUCAUGAAAUUUGAAGACUACUGACUACAGACCAUGCCAAUAUAAUUUCCUAUAUAUGCAACACAAUGCAGCUACAAGGAUAGGAUAAAGUUCAUUUGGUUUAUGUUUAGCAAGAGGACCUACCGAUUUGUCAGAUUACAGUUAUAUACCUUUUGCUUACCAUGAAGGCAUCCCCUUUUUACAUUUUAGUACGACGCUUCAUCUUACAUCGGGUUUUACUGGUUUAUAAUUUAUCAUUUAUUUUUUCAGCAUUUGAUUGAAUUUCUUGUACUAAAUCAUGUAAUUUUUAAUGUCUGUGGUUUUACAAGAACCUCUCCAACACCUUAAAGGAUGUUCUUUAGAAAUUAGAUGAUCUUCAAAGUCCACAUUCCUAGAGUCACUUGGGAGAGUACAAUUAGUGAACUAUUAGCAUACCGUACUUUUGAAUCAAUAUUCCUAUUUCUAGAGGCGAGAAAAAAGAAAGCAUGUCUAUUGUACUUGUAAUUACAUGUGAAUGACCCUGUAAAUUAUGUUAGGUCUCCAGUACUGUUGUAUGUGCUGCACUUAUUUUCCAGAUAACCCUUCUGAUAGCUCAAGUGAAGCUGAUCAUGAUAGCUCAAGUGAAGCUGAUCAUGCAACGAGUUUUAUGUGUUAGUAAGUCUUGUGUGUAAAUCAAUAUGCUGUGAGGUGCAAGUAUAAUUAAUGGAUCAACAUCAUUUCAUUUA


Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

58

LEP:

11.79%

ME_num:

243

MEP:

49.39%

HE_num:

190

HEP:

38.62%

Type:

HCR (High-Capacity ncRNA)


Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

flower

Tau :

0.67

Avg Expression:

11.31

Tip: OSA-LNC9270599 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2"1.608385075164420.00186493800601939
2Nipponbare // leaf // control--/--Nipponbare // leaf // drought1.608308089427830.00189074569140407
3Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1"1.608167946978930.0018773098951094
4Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA-2.045179907838585.70323175687182e-23