Chr:
Chr9
Start:
15563056
End:
15563843
Strand:
+
Ref_name:
LOC9270551
Sequence
(XR_001540180.2):
AAGAGGGGUCAAAAUGUCAAAAUUUCAGCUUCCUCGACGGCUCGACGCCAUGGCGCGCCGCCGCGGCCCGCGGCCCAAGCCGCCAUUAUCCGCUCGACGAACGUCGCCGCGUCGCGCUCUUCCCGGGGGCUCUCUCUUUUGCCGGUCUCUGUAGGGCUCCACUAAUGGCGAAAACGCGGCGCGGCACGUCAGUCGCCAAGGGUUCGGGAGAUAAGAGGCCAUCCACUUAUCCACCCUAGCCUCCUCUGUAGGGAAGACCCCCGCCGAACGCUGCGCCGGUCGUCGCCGGAGUCCGGGCUCAGCAGAUCGACCCCCCGUAGAGUCAUUAAGGAAAGGGUUUGAGUGCUCAGAUGGGGUGAGAAGAAGCUAUCCAAGGCGGCGCAGACGUUGUAUCGGUUCCGUACUAUCUCUCUCUUUUAGCAAUUGGUGGUAUUUCUUUUGGUAAUACUAUUGCGGGACUUCGGGAUACUAUUGCUGUGGUAUCGCAACGUUUGGACCAGGUGGCACAGGAGUUUUUCACCCAGGAGCAUGGGUGGCGAUCUAGUCUACAGAUUGAUAGUCACUAGUUUCUGUGUUUUGUGAUGAGGAAGUCUUCUUAGGUCCAGUUUUUUGGCUGUGUGCAUUCUAUGCAAAGGCCGGGGGUAGACUCAGUUGGAAUGUAUCAUCUUGGUGUAUUUAACCGAGUCUUAAUAAAGCUUCCAUUAUUUAAAAGUUU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
18.9%
ME_num:
MEP:
11.38%
HE_num:
HEP:
69.51%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot_apical_meristem
Tau :
0.69
Avg Expression:
22.85
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 1.06350974787715 | 0.000709682347823514 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 1.43204610093925 | 2.34349247375919e-07 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 1.36030302248319 | 1.53986515684253e-05 |