OSA-LNC9270520


Function Link


Basic Info

Chr:

Chr4

Start:

12032957

End:

12038000

Strand:

-

Ref_name:

LOC9270520

Sequence
(XR_001545663.2):

GAUCACCUCUGCAAUUAGCGAUCUCCCACCAAUCUCAUACCUCGAGUAAACAGCGGUUACAGCAAAAUAGCGAUUGGAUUAGCGCUCUUCCCCGUCCUAUCCCCAAACCGCCGGGCGCACUCCUCCCCGCCUCCACCCCUGACCGUGCCUCCCCACCGCCGUUGGGCGUUCCCCACCCCGUGUCUACGCAUCCCACCGGCGCCCUUCCCCCCGCAUCCGUGCCUCACUACCGCCGCGCUUUCCCCCUCUGCGGGUUCCCCUCGCGCGCGUUCGCGCUUCACCACCGUCGCGCCUUCCCCGCUGCCUCCUCAAUUCCUCGCCGCCACCGGUUCCCUACUCCGCCUGCAACCGCCACCAUCGGAGCCGUGGAUCCAUCGCUGCCAUGAACUCCACCUGCGAUCUGGCGUGACGACAGGAGCAGAGCUGCGACUACCGGGCUUCCAUGGUGCUGCUCAAGGAGGAAAUUCCAAGCUGAAAAGAGCAGAGUAGGAUAUUCAUUCUAAAGGUGAACGCUAGCAAUGUGAAUCAUCUGAGAUUGAGAAGGUCAUUACUUUUAGAAAUAUUUUUAUAAAAGUUUGUAUGCAUGGAUUGUUCUAGACGUUUUGUUUCGUAGAUUUGUACAAUUUUUACCAAUAGACAUUGUUAGUUACCUCACGUGCUUCUUGUUGAUGCAAAUUUUGUUUUUCUCCUCCCACCGCUUGGCCCAGCCCACAUAUGUGACUGACUGUGUGACAGUCCCUGUAUAUCUUUGUCAUUGUUACUACUAAAGACAUGUGGAGACCGUUAUGGACUAAAAAUACUGCAUACUUUAGUUUCAGGAUGAGGCCAUUCUAAUAUUUCUGCUGCUACAAGCCCCUAUAGUCCUAUACUUCUAUGCACCAUCACUUGAUACUUUGGACAUCAUUAUAAGCAAUGGUAUUGCAUGUAGAGUAUUCUAUUGAUAUUACUGGAUAUCAUGCUUUCAUACACAUCACAAAUUCAGAUUUAUGCAGUGAUAAUAUUUUCCUUGAACAUGUCAAGUUUAGUUCUAUACACAUAAUUCAUGAUAACUGAAUAUGUAAACGUUUUUCCUGCAGUACAAACAUGCAAUUGUUUAUGUACAAAGGAUUUGUUUUUCAGUUUUCAUUGAUAGGAACCCCUGAAUUGAAGAAAUGGCUCUGGAGUGCUUAUGUUCUUCCCCUGUUGGAGCUGGUUCUUCCUUAGGCCUGUAGCAAUGGUCCACUUCAUUGUCACAUAUUCAAACACCAUGUACUCAUGAGAUGCUAUGGAACUGUGACUUCCCCUCUGGUCCUGAGGCCUGAUUGUUGCAGGUGAAGGUGAGCUCUGUUAGAGGAAAACACGUAAAUGUUUUGGCAGACCACAAAGCUAGACCAUGGAUGCCAUCCUGUGGUUGGGGCUUAUCCUAUAGGCAAUUAGUUCUUGGGCUCCACUGUACUUUUGUUCUUAGGCUAAUUUUCAAUAUCAUAUUCCCAUGUGGCAGUAGAUUAUUAUUACAUGGUAGCUCAAACUAAUGUGAUGCAGUUUCUGGGUAUUCCAAUUUGUGCAUUUCUUAAUUUAAUCAUAUAUUUGACUGGAAUGGGCAUAUAUGUGACUUUGAUAGCUAGAUAUGUAAAAAAGUUUUGAGAUUUCUGGACAUCUUUCAUUUGUCAAUGCAGUUCUAUUUCUUUUCUACUAUUGAAGGCAAGAAAUAUAAUUUACCGUACCUUUUUUAUCAGCUAUAGUGUUUUUGUUGUUAGCCUUUGAAGCUAUUGCUUUUAAAGUGCUGUAAUCAUCUCGAAAAAUUAUUAUUUCAGCCAGUUGACAUUGCAAGUUAAUUAAGUAAAUUUACAUGUGGCAUAAAUCCUUUGUAGCUUGUUUAUCCUGUUAUGAUAAUUACCCAUAUUUUAGAUACCAUAUUUGAAUUGCACUGCCACAAGGAUCACUGCAUAUCUACAAUAUUGUUGGUAAGAAAUAUAUACAUUGUUAAUACUCUUAUUUCAUAUACUCGUAGUAGGAGUUAUGGCUUCAAUCCAUUUCACCUGUUUGGACUGGAGAGCAUUGUAAUGGACUGAGUAUAGACAACAUGUCUCAAGAUUAUUGAAAUGUACAGAGUAUAUAUAGACCACAUGUCCAAAGAUAAUUGAAGCAAGGAACGAUUUGUUUAGACAGGAGAGCACUGUAAAUGUUGCUGCUCUCCAAAUUUCUUCUGUAAUGUAUCUCUUACACUACCUCAUAUGUAUGUAUAUUGCCUAAAGGGACAAUUUAGGCCCAUGUGUUGGAUACUGCCUAACCCAACUUUGGCGAUGAACAUCAAGGUUCAGAGAAAAAAAUGUUUUUGUUUUACAGUGAUUCAGCAGGUGGUAUGCGAAGUUCAGAUAAUUUCAGCAGGGUUUUGUUUUAAUGUGUAUCUGACAAAUCACAACAUUCAAUUAGAUAAUUUUGAUAAAAUUGAGAAAAACAAUAUGUUCUAAGUCUGUAUAUAGAAAAUGGUUUUAUUAGACGUGUAUUAAACGUGCUUGACCAUUGCAAGAUUUUCUUAUAGUAAUUUUGGCAAAUUUGGAAGCUGAUUGAUUGACAGCUGGAGGUGUGGUUUUGUUUGCAGGUGCUCAAACCAGGCUGCUUUAGGGCUUCAACUAGCUCAUCCAAGACGUCGCCUCUCACAUCUACCUCAACUGAAAAAUGACAAAAAAAUGCUACAAUUUGUAAACAGAUUUGCGUACUUCAGUACCAUCAGCGUGACAGAUGUCACUGUGCCUUUAUUCUGCCUUUUGGCUCACAACUUCAUCACUAUAACUGCAACCUUUUCUUGCAGAAAGAUCAUAUUGUCACAGCAACCUGAUGAUGUUAUUAGCAACCAUCCAAUUUAUCAACCUAAUGAUGCUGUUAGUAAUUAUCUAA

Sequence
(XR_001545664.2):

UAGCGAUCUCCCACCAAUCUCAUACCUCGAGUAAACAGCGGUUACAGCAAAAUAGCGAUUGGAUUAGCGCUCUUCCCCGUCCUAUCCCCAAACCGCCGGGCGCACUCCUCCCCGCCUCCACCCCUGACCGUGCCUCCCCACCGCCGUUGGGCGUUCCCCACCCCGUGUCUACGCAUCCCACCGGCGCCCUUCCCCCCGCAUCCGUGCCUCACUACCGCCGCGCUUUCCCCCUCUGCGGGUUCCCCUCGCGCGCGUUCGCGCUUCACCACCGUCGCGCCUUCCCCGCUGCCUCCUCAAUUCCUCGCCGCCACCGGUUCCCUACUCCGCCUGCAACCGCCACCAUCGGAGCCGUGGAUCCAUCGCUGCCAUGAACUCCACCUGCGAUCUGGCGUGACGACAGGAGCAGAGCUGCGACUACCGGGCUUCCAUGGUGCUGCUCAAGGAGGAAAUUCCAAGCUGAAAAGAGCAGAGUAGGAUAUUCAUUCUAAAGGUGAACGCUAGCAAUGUGAAUCAUCUGAGAUUGAGAAGUUUUCAUUGAUAGGAACCCCUGAAUUGAAGAAAUGGCUCUGGAGUGCUUAUGUUCUUCCCCUGUUGGAGCUGGUUCUUCCUUAGGCCUGUAGCAAUGGUCCACUUCAUUGUCACAUAUUCAAACACCAUGUACUCAUGAGAUGCUAUGGAACUGUGACUUCCCCUCUGGUCCUGAGGCCUGAUUGUUGCAGGUGAAGGUGAGCUCUGUUAGAGGAAAACACGUAAAUGUUUUGGCAGACCACAAAGCUAGACCAUGGAUGCCAUCCUGUGGUUGGGGCUUAUCCUAUAGGCAAUUAGUUCUUGGGCUCCACUGUACUUUUGUUCUUAGGCUAAUUUUCAAUAUCAUAUUCCCAUGUGGCAGUAGAUUAUUAUUACAUGGUAGCUCAAACUAAUGUGAUGCAGUUUCUGGGUAUUCCAAUUUGUGCAUUUCUUAAUUUAAUCAUAUAUUUGACUGGAAUGGGCAUAUAUGUGACUUUGAUAGCUAGAUAUGUAAAAAAGUUUUGAGAUUUCUGGACAUCUUUCAUUUGUCAAUGCAGUUCUAUUUCUUUUCUACUAUUGAAGGCAAGAAAUAUAAUUUACCGUACCUUUUUUAUCAGCUAUAGUGUUUUUGUUGUUAGCCUUUGAAGCUAUUGCUUUUAAAGUGCUGUAAUCAUCUCGAAAAAUUAUUAUUUCAGCCAGUUGACAUUGCAAGUUAAUUAAGUAAAUUUACAUGUGGCAUAAAUCCUUUGUAGCUUGUUUAUCCUGUUAUGAUAAUUACCCAUAUUUUAGAUACCAUAUUUGAAUUGCACUGCCACAAGGAUCACUGCAUAUCUACAAUAUUGUUGGUAAGAAAUAUAUACAUUGUUAAUACUCUUAUUUCAUAUACUCGUAGUAGGAGUUAUGGCUUCAAUCCAUUUCACCUGUUUGGACUGGAGAGCAUUGUAAUGGACUGAGUAUAGACAACAUGUCUCAAGAUUAUUGAAAUGUACAGAGUAUAUAUAGACCACAUGUCCAAAGAUAAUUGAAGCAAGGAACGAUUUGUUUAGACAGGAGAGCACUGUAAAUGUUGCUGCUCUCCAAAUUUCUUCUGUAAUGUAUCUCUUACACUACCUCAUAUGUAUGUAUAUUGCCUAAAGGGACAAUUUAGGCCCAUGUGUUGGAUACUGCCUAACCCAACUUUGGCGAUGAACAUCAAGGUUCAGAGAAAAAAAUGUUUUUGUUUUACAGUGAUUCAGCAGGUGGUAUGCGAAGUUCAGAUAAUUUCAGCAGGGUUUUGUUUUAAUGUGUAUCUGACAAAUCACAACAUUCAAUUAGAUAAUUUUGAUAAAAUUGAGAAAAACAAUAUGUUCUAAGUCUGUAUAUAGAAAAUGGUUUUAUUAGACGUGUAUUAAACGUGCUUGACCAUUGCAAGAUUUUCUUAUAGUAAUUUUGGCAAAUUUGGAAGCUGAUUGAUUGACAGCUGGAGGUGUGGUUUUGUUUGCAGGUGCUCAAACCAGGCUGCUUUAGGGCUUCAACUAGCUCAUCCAAGACGUCGCCUCUCACAUCUACCUCAACUGAAAAAUGACAAAAAAAUGCUACAAUUUGUAAACAGAUUUGCGUACUUCAGUACCAUCAGCGUGACAGAUGUCACUGUGCCUUUAUUCUGCCUUUUGGCUCACAACUUCAUCACUAUAACUGCAACCUUUUCUUGCAGAAAGAUCAUAUUGUCACAGCAACCUGAUGAUGUUAUUAGCAACCAUCCAAUUUAUCAACCUAAUGAUGCUGUUAGUAAUUAUCUAA

Sequence
(XR_001545665.2):

ACCUCUGCAAUUAGCGAUCUCCCACCAAUCUCAUACCUCGAGUAAACAGCGGUUACAGCAAAAUAGCGAUUGGAUUAGCGCUCUUCCCCGUCCUAUCCCCAAACCGCCGGGCGCACUCCUCCCCGCCUCCACCCCUGACCGUGCCUCCCCACCGCCGUUGGGCGUUCCCCACCCCGUGUCUACGCAUCCCACCGGCGCCCUUCCCCCCGCAUCCGUGCCUCACUACCGCCGCGCUUUCCCCCUCUGCGGGUUCCCCUCGCGCGCGUUCGCGCUUCACCACCGUCGCGCCUUCCCCGCUGCCUCCUCAAUUCCUCGCCGCCACCGGUUCCCUACUCCGCCUGCAACCGCCACCAUCGGAGCCGUGGAUCCAUCGCUGCCAUGAACUCCACCUGCGAUCUGGCGUGACGACAGGAGCAGAGCUGCGACUACCGGGCUUCCAUGGUGCUGCUCAAGGAGGAAAUUCCAAGCUGAAAAGAGCAGAGUAGGAUAUUCAUUCUAAAGGUGAACGCUAGCAAUGUGAAUCAUCUGAGAUUGAGAAGUACAAACAUGCAAUUGUUUAUGUACAAAGGAUUUGUUUUUCAGUUUUCAUUGAUAGGAACCCCUGAAUUGAAGAAAUGGCUCUGGAGUGCUUAUGUUCUUCCCCUGUUGGAGCUGGUUCUUCCUUAGGCCUGUAGCAAUGGUCCACUUCAUUGUCACAUAUUCAAACACCAUGUACUCAUGAGAUGCUAUGGAACUGUGACUUCCCCUCUGGUCCUGAGGCCUGAUUGUUGCAGGUGAAGGUGAGCUCUGUUAGAGGAAAACACGUAAAUGUUUUGGCAGACCACAAAGCUAGACCAUGGAUGCCAUCCUGUGGUUGGGGCUUAUCCUAUAGGCAAUUAGUUCUUGGGCUCCACUGUACUUUUGUUCUUAGGCUAAUUUUCAAUAUCAUAUUCCCAUGUGGCAGUAGAUUAUUAUUACAUGGUAGCUCAAACUAAUGUGAUGCAGUUUCUGGGUAUUCCAAUUUGUGCAUUUCUUAAUUUAAUCAUAUAUUUGACUGGAAUGGGCAUAUAUGUGACUUUGAUAGCUAGAUAUGUAAAAAAGUUUUGAGAUUUCUGGACAUCUUUCAUUUGUCAAUGCAGUUCUAUUUCUUUUCUACUAUUGAAGGCAAGAAAUAUAAUUUACCGUACCUUUUUUAUCAGCUAUAGUGUUUUUGUUGUUAGCCUUUGAAGCUAUUGCUUUUAAAGUGCUGUAAUCAUCUCGAAAAAUUAUUAUUUCAGCCAGUUGACAUUGCAAGUUAAUUAAGUAAAUUUACAUGUGGCAUAAAUCCUUUGUAGCUUGUUUAUCCUGUUAUGAUAAUUACCCAUAUUUUAGAUACCAUAUUUGAAUUGCACUGCCACAAGGAUCACUGCAUAUCUACAAUAUUGUUGGUAAGAAAUAUAUACAUUGUUAAUACUCUUAUUUCAUAUACUCGUAGUAGGAGUUAUGGCUUCAAUCCAUUUCACCUGUUUGGACUGGAGAGCAUUGUAAUGGACUGAGUAUAGACAACAUGUCUCAAGAUUAUUGAAAUGUACAGAGUAUAUAUAGACCACAUGUCCAAAGAUAAUUGAAGCAAGGAACGAUUUGUUUAGACAGGAGAGCACUGUAAAUGUUGCUGCUCUCCAAAUUUCUUCUGUAAUGUAUCUCUUACACUACCUCAUAUGUAUGUAUAUUGCCUAAAGGGACAAUUUAGGCCCAUGUGUUGGAUACUGCCUAACCCAACUUUGGCGAUGAACAUCAAGGUUCAGAGAAAAAAAUGUUUUUGUUUUACAGUGAUUCAGCAGGUGGUAUGCGAAGUUCAGAUAAUUUCAGCAGGGUUUUGUUUUAAUGUGUAUCUGACAAAUCACAACAUUCAAUUAGAUAAUUUUGAUAAAAUUGAGAAAAACAAUAUGUUCUAAGUCUGUAUAUAGAAAAUGGUUUUAUUAGACGUGUAUUAAACGUGCUUGACCAUUGCAAGAUUUUCUUAUAGUAAUUUUGGCAAAUUUGGAAGCUGAUUGAUUGACAGCUGGAGGUGUGGUUUUGUUUGCAGGUGCUCAAACCAGGCUGCUUUAGGGCUUCAACUAGCUCAUCCAAGACGUCGCCUCUCACAUCUACCUCAACUGAAAAAUGACAAAAAAAUGCUACAAUUUGUAAACAGAUUUGCGUACUUCAGUACCAUCAGCGUGACAGAUGUCACUGUGCCUUUAUUCUGCCUUUUGGCUCACAACUUCAUCACUAUAACUGCAACCUUUUCUUGCAGAAAGAUCAUAUUGUCACAGCAACCUGAUGAUGUUAUUAGCAACCAUCCAAUUUAUCAACCUAAUGAUGCUGUUAGUAAUUAUCUAA


Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

4

LEP:

0.81%

ME_num:

150

MEP:

30.49%

HE_num:

337

HEP:

68.5%

Type:

HCR (High-Capacity ncRNA)


Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

caryopsis

Tau :

0.69

Avg Expression:

19.61

Tip: OSA-LNC9270520 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN1.173828597405142.20032060804949e-09
2Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days"-1.358056403617260.00146705649278961