Chr:
Chr4
Start:
12032957
End:
12038000
Strand:
-
Ref_name:
LOC9270520
Sequence
(XR_001545663.2):
GAUCACCUCUGCAAUUAGCGAUCUCCCACCAAUCUCAUACCUCGAGUAAACAGCGGUUACAGCAAAAUAGCGAUUGGAUUAGCGCUCUUCCCCGUCCUAUCCCCAAACCGCCGGGCGCACUCCUCCCCGCCUCCACCCCUGACCGUGCCUCCCCACCGCCGUUGGGCGUUCCCCACCCCGUGUCUACGCAUCCCACCGGCGCCCUUCCCCCCGCAUCCGUGCCUCACUACCGCCGCGCUUUCCCCCUCUGCGGGUUCCCCUCGCGCGCGUUCGCGCUUCACCACCGUCGCGCCUUCCCCGCUGCCUCCUCAAUUCCUCGCCGCCACCGGUUCCCUACUCCGCCUGCAACCGCCACCAUCGGAGCCGUGGAUCCAUCGCUGCCAUGAACUCCACCUGCGAUCUGGCGUGACGACAGGAGCAGAGCUGCGACUACCGGGCUUCCAUGGUGCUGCUCAAGGAGGAAAUUCCAAGCUGAAAAGAGCAGAGUAGGAUAUUCAUUCUAAAGGUGAACGCUAGCAAUGUGAAUCAUCUGAGAUUGAGAAGGUCAUUACUUUUAGAAAUAUUUUUAUAAAAGUUUGUAUGCAUGGAUUGUUCUAGACGUUUUGUUUCGUAGAUUUGUACAAUUUUUACCAAUAGACAUUGUUAGUUACCUCACGUGCUUCUUGUUGAUGCAAAUUUUGUUUUUCUCCUCCCACCGCUUGGCCCAGCCCACAUAUGUGACUGACUGUGUGACAGUCCCUGUAUAUCUUUGUCAUUGUUACUACUAAAGACAUGUGGAGACCGUUAUGGACUAAAAAUACUGCAUACUUUAGUUUCAGGAUGAGGCCAUUCUAAUAUUUCUGCUGCUACAAGCCCCUAUAGUCCUAUACUUCUAUGCACCAUCACUUGAUACUUUGGACAUCAUUAUAAGCAAUGGUAUUGCAUGUAGAGUAUUCUAUUGAUAUUACUGGAUAUCAUGCUUUCAUACACAUCACAAAUUCAGAUUUAUGCAGUGAUAAUAUUUUCCUUGAACAUGUCAAGUUUAGUUCUAUACACAUAAUUCAUGAUAACUGAAUAUGUAAACGUUUUUCCUGCAGUACAAACAUGCAAUUGUUUAUGUACAAAGGAUUUGUUUUUCAGUUUUCAUUGAUAGGAACCCCUGAAUUGAAGAAAUGGCUCUGGAGUGCUUAUGUUCUUCCCCUGUUGGAGCUGGUUCUUCCUUAGGCCUGUAGCAAUGGUCCACUUCAUUGUCACAUAUUCAAACACCAUGUACUCAUGAGAUGCUAUGGAACUGUGACUUCCCCUCUGGUCCUGAGGCCUGAUUGUUGCAGGUGAAGGUGAGCUCUGUUAGAGGAAAACACGUAAAUGUUUUGGCAGACCACAAAGCUAGACCAUGGAUGCCAUCCUGUGGUUGGGGCUUAUCCUAUAGGCAAUUAGUUCUUGGGCUCCACUGUACUUUUGUUCUUAGGCUAAUUUUCAAUAUCAUAUUCCCAUGUGGCAGUAGAUUAUUAUUACAUGGUAGCUCAAACUAAUGUGAUGCAGUUUCUGGGUAUUCCAAUUUGUGCAUUUCUUAAUUUAAUCAUAUAUUUGACUGGAAUGGGCAUAUAUGUGACUUUGAUAGCUAGAUAUGUAAAAAAGUUUUGAGAUUUCUGGACAUCUUUCAUUUGUCAAUGCAGUUCUAUUUCUUUUCUACUAUUGAAGGCAAGAAAUAUAAUUUACCGUACCUUUUUUAUCAGCUAUAGUGUUUUUGUUGUUAGCCUUUGAAGCUAUUGCUUUUAAAGUGCUGUAAUCAUCUCGAAAAAUUAUUAUUUCAGCCAGUUGACAUUGCAAGUUAAUUAAGUAAAUUUACAUGUGGCAUAAAUCCUUUGUAGCUUGUUUAUCCUGUUAUGAUAAUUACCCAUAUUUUAGAUACCAUAUUUGAAUUGCACUGCCACAAGGAUCACUGCAUAUCUACAAUAUUGUUGGUAAGAAAUAUAUACAUUGUUAAUACUCUUAUUUCAUAUACUCGUAGUAGGAGUUAUGGCUUCAAUCCAUUUCACCUGUUUGGACUGGAGAGCAUUGUAAUGGACUGAGUAUAGACAACAUGUCUCAAGAUUAUUGAAAUGUACAGAGUAUAUAUAGACCACAUGUCCAAAGAUAAUUGAAGCAAGGAACGAUUUGUUUAGACAGGAGAGCACUGUAAAUGUUGCUGCUCUCCAAAUUUCUUCUGUAAUGUAUCUCUUACACUACCUCAUAUGUAUGUAUAUUGCCUAAAGGGACAAUUUAGGCCCAUGUGUUGGAUACUGCCUAACCCAACUUUGGCGAUGAACAUCAAGGUUCAGAGAAAAAAAUGUUUUUGUUUUACAGUGAUUCAGCAGGUGGUAUGCGAAGUUCAGAUAAUUUCAGCAGGGUUUUGUUUUAAUGUGUAUCUGACAAAUCACAACAUUCAAUUAGAUAAUUUUGAUAAAAUUGAGAAAAACAAUAUGUUCUAAGUCUGUAUAUAGAAAAUGGUUUUAUUAGACGUGUAUUAAACGUGCUUGACCAUUGCAAGAUUUUCUUAUAGUAAUUUUGGCAAAUUUGGAAGCUGAUUGAUUGACAGCUGGAGGUGUGGUUUUGUUUGCAGGUGCUCAAACCAGGCUGCUUUAGGGCUUCAACUAGCUCAUCCAAGACGUCGCCUCUCACAUCUACCUCAACUGAAAAAUGACAAAAAAAUGCUACAAUUUGUAAACAGAUUUGCGUACUUCAGUACCAUCAGCGUGACAGAUGUCACUGUGCCUUUAUUCUGCCUUUUGGCUCACAACUUCAUCACUAUAACUGCAACCUUUUCUUGCAGAAAGAUCAUAUUGUCACAGCAACCUGAUGAUGUUAUUAGCAACCAUCCAAUUUAUCAACCUAAUGAUGCUGUUAGUAAUUAUCUAA
Sequence
(XR_001545664.2):
UAGCGAUCUCCCACCAAUCUCAUACCUCGAGUAAACAGCGGUUACAGCAAAAUAGCGAUUGGAUUAGCGCUCUUCCCCGUCCUAUCCCCAAACCGCCGGGCGCACUCCUCCCCGCCUCCACCCCUGACCGUGCCUCCCCACCGCCGUUGGGCGUUCCCCACCCCGUGUCUACGCAUCCCACCGGCGCCCUUCCCCCCGCAUCCGUGCCUCACUACCGCCGCGCUUUCCCCCUCUGCGGGUUCCCCUCGCGCGCGUUCGCGCUUCACCACCGUCGCGCCUUCCCCGCUGCCUCCUCAAUUCCUCGCCGCCACCGGUUCCCUACUCCGCCUGCAACCGCCACCAUCGGAGCCGUGGAUCCAUCGCUGCCAUGAACUCCACCUGCGAUCUGGCGUGACGACAGGAGCAGAGCUGCGACUACCGGGCUUCCAUGGUGCUGCUCAAGGAGGAAAUUCCAAGCUGAAAAGAGCAGAGUAGGAUAUUCAUUCUAAAGGUGAACGCUAGCAAUGUGAAUCAUCUGAGAUUGAGAAGUUUUCAUUGAUAGGAACCCCUGAAUUGAAGAAAUGGCUCUGGAGUGCUUAUGUUCUUCCCCUGUUGGAGCUGGUUCUUCCUUAGGCCUGUAGCAAUGGUCCACUUCAUUGUCACAUAUUCAAACACCAUGUACUCAUGAGAUGCUAUGGAACUGUGACUUCCCCUCUGGUCCUGAGGCCUGAUUGUUGCAGGUGAAGGUGAGCUCUGUUAGAGGAAAACACGUAAAUGUUUUGGCAGACCACAAAGCUAGACCAUGGAUGCCAUCCUGUGGUUGGGGCUUAUCCUAUAGGCAAUUAGUUCUUGGGCUCCACUGUACUUUUGUUCUUAGGCUAAUUUUCAAUAUCAUAUUCCCAUGUGGCAGUAGAUUAUUAUUACAUGGUAGCUCAAACUAAUGUGAUGCAGUUUCUGGGUAUUCCAAUUUGUGCAUUUCUUAAUUUAAUCAUAUAUUUGACUGGAAUGGGCAUAUAUGUGACUUUGAUAGCUAGAUAUGUAAAAAAGUUUUGAGAUUUCUGGACAUCUUUCAUUUGUCAAUGCAGUUCUAUUUCUUUUCUACUAUUGAAGGCAAGAAAUAUAAUUUACCGUACCUUUUUUAUCAGCUAUAGUGUUUUUGUUGUUAGCCUUUGAAGCUAUUGCUUUUAAAGUGCUGUAAUCAUCUCGAAAAAUUAUUAUUUCAGCCAGUUGACAUUGCAAGUUAAUUAAGUAAAUUUACAUGUGGCAUAAAUCCUUUGUAGCUUGUUUAUCCUGUUAUGAUAAUUACCCAUAUUUUAGAUACCAUAUUUGAAUUGCACUGCCACAAGGAUCACUGCAUAUCUACAAUAUUGUUGGUAAGAAAUAUAUACAUUGUUAAUACUCUUAUUUCAUAUACUCGUAGUAGGAGUUAUGGCUUCAAUCCAUUUCACCUGUUUGGACUGGAGAGCAUUGUAAUGGACUGAGUAUAGACAACAUGUCUCAAGAUUAUUGAAAUGUACAGAGUAUAUAUAGACCACAUGUCCAAAGAUAAUUGAAGCAAGGAACGAUUUGUUUAGACAGGAGAGCACUGUAAAUGUUGCUGCUCUCCAAAUUUCUUCUGUAAUGUAUCUCUUACACUACCUCAUAUGUAUGUAUAUUGCCUAAAGGGACAAUUUAGGCCCAUGUGUUGGAUACUGCCUAACCCAACUUUGGCGAUGAACAUCAAGGUUCAGAGAAAAAAAUGUUUUUGUUUUACAGUGAUUCAGCAGGUGGUAUGCGAAGUUCAGAUAAUUUCAGCAGGGUUUUGUUUUAAUGUGUAUCUGACAAAUCACAACAUUCAAUUAGAUAAUUUUGAUAAAAUUGAGAAAAACAAUAUGUUCUAAGUCUGUAUAUAGAAAAUGGUUUUAUUAGACGUGUAUUAAACGUGCUUGACCAUUGCAAGAUUUUCUUAUAGUAAUUUUGGCAAAUUUGGAAGCUGAUUGAUUGACAGCUGGAGGUGUGGUUUUGUUUGCAGGUGCUCAAACCAGGCUGCUUUAGGGCUUCAACUAGCUCAUCCAAGACGUCGCCUCUCACAUCUACCUCAACUGAAAAAUGACAAAAAAAUGCUACAAUUUGUAAACAGAUUUGCGUACUUCAGUACCAUCAGCGUGACAGAUGUCACUGUGCCUUUAUUCUGCCUUUUGGCUCACAACUUCAUCACUAUAACUGCAACCUUUUCUUGCAGAAAGAUCAUAUUGUCACAGCAACCUGAUGAUGUUAUUAGCAACCAUCCAAUUUAUCAACCUAAUGAUGCUGUUAGUAAUUAUCUAA
Sequence
(XR_001545665.2):
ACCUCUGCAAUUAGCGAUCUCCCACCAAUCUCAUACCUCGAGUAAACAGCGGUUACAGCAAAAUAGCGAUUGGAUUAGCGCUCUUCCCCGUCCUAUCCCCAAACCGCCGGGCGCACUCCUCCCCGCCUCCACCCCUGACCGUGCCUCCCCACCGCCGUUGGGCGUUCCCCACCCCGUGUCUACGCAUCCCACCGGCGCCCUUCCCCCCGCAUCCGUGCCUCACUACCGCCGCGCUUUCCCCCUCUGCGGGUUCCCCUCGCGCGCGUUCGCGCUUCACCACCGUCGCGCCUUCCCCGCUGCCUCCUCAAUUCCUCGCCGCCACCGGUUCCCUACUCCGCCUGCAACCGCCACCAUCGGAGCCGUGGAUCCAUCGCUGCCAUGAACUCCACCUGCGAUCUGGCGUGACGACAGGAGCAGAGCUGCGACUACCGGGCUUCCAUGGUGCUGCUCAAGGAGGAAAUUCCAAGCUGAAAAGAGCAGAGUAGGAUAUUCAUUCUAAAGGUGAACGCUAGCAAUGUGAAUCAUCUGAGAUUGAGAAGUACAAACAUGCAAUUGUUUAUGUACAAAGGAUUUGUUUUUCAGUUUUCAUUGAUAGGAACCCCUGAAUUGAAGAAAUGGCUCUGGAGUGCUUAUGUUCUUCCCCUGUUGGAGCUGGUUCUUCCUUAGGCCUGUAGCAAUGGUCCACUUCAUUGUCACAUAUUCAAACACCAUGUACUCAUGAGAUGCUAUGGAACUGUGACUUCCCCUCUGGUCCUGAGGCCUGAUUGUUGCAGGUGAAGGUGAGCUCUGUUAGAGGAAAACACGUAAAUGUUUUGGCAGACCACAAAGCUAGACCAUGGAUGCCAUCCUGUGGUUGGGGCUUAUCCUAUAGGCAAUUAGUUCUUGGGCUCCACUGUACUUUUGUUCUUAGGCUAAUUUUCAAUAUCAUAUUCCCAUGUGGCAGUAGAUUAUUAUUACAUGGUAGCUCAAACUAAUGUGAUGCAGUUUCUGGGUAUUCCAAUUUGUGCAUUUCUUAAUUUAAUCAUAUAUUUGACUGGAAUGGGCAUAUAUGUGACUUUGAUAGCUAGAUAUGUAAAAAAGUUUUGAGAUUUCUGGACAUCUUUCAUUUGUCAAUGCAGUUCUAUUUCUUUUCUACUAUUGAAGGCAAGAAAUAUAAUUUACCGUACCUUUUUUAUCAGCUAUAGUGUUUUUGUUGUUAGCCUUUGAAGCUAUUGCUUUUAAAGUGCUGUAAUCAUCUCGAAAAAUUAUUAUUUCAGCCAGUUGACAUUGCAAGUUAAUUAAGUAAAUUUACAUGUGGCAUAAAUCCUUUGUAGCUUGUUUAUCCUGUUAUGAUAAUUACCCAUAUUUUAGAUACCAUAUUUGAAUUGCACUGCCACAAGGAUCACUGCAUAUCUACAAUAUUGUUGGUAAGAAAUAUAUACAUUGUUAAUACUCUUAUUUCAUAUACUCGUAGUAGGAGUUAUGGCUUCAAUCCAUUUCACCUGUUUGGACUGGAGAGCAUUGUAAUGGACUGAGUAUAGACAACAUGUCUCAAGAUUAUUGAAAUGUACAGAGUAUAUAUAGACCACAUGUCCAAAGAUAAUUGAAGCAAGGAACGAUUUGUUUAGACAGGAGAGCACUGUAAAUGUUGCUGCUCUCCAAAUUUCUUCUGUAAUGUAUCUCUUACACUACCUCAUAUGUAUGUAUAUUGCCUAAAGGGACAAUUUAGGCCCAUGUGUUGGAUACUGCCUAACCCAACUUUGGCGAUGAACAUCAAGGUUCAGAGAAAAAAAUGUUUUUGUUUUACAGUGAUUCAGCAGGUGGUAUGCGAAGUUCAGAUAAUUUCAGCAGGGUUUUGUUUUAAUGUGUAUCUGACAAAUCACAACAUUCAAUUAGAUAAUUUUGAUAAAAUUGAGAAAAACAAUAUGUUCUAAGUCUGUAUAUAGAAAAUGGUUUUAUUAGACGUGUAUUAAACGUGCUUGACCAUUGCAAGAUUUUCUUAUAGUAAUUUUGGCAAAUUUGGAAGCUGAUUGAUUGACAGCUGGAGGUGUGGUUUUGUUUGCAGGUGCUCAAACCAGGCUGCUUUAGGGCUUCAACUAGCUCAUCCAAGACGUCGCCUCUCACAUCUACCUCAACUGAAAAAUGACAAAAAAAUGCUACAAUUUGUAAACAGAUUUGCGUACUUCAGUACCAUCAGCGUGACAGAUGUCACUGUGCCUUUAUUCUGCCUUUUGGCUCACAACUUCAUCACUAUAACUGCAACCUUUUCUUGCAGAAAGAUCAUAUUGUCACAGCAACCUGAUGAUGUUAUUAGCAACCAUCCAAUUUAUCAACCUAAUGAUGCUGUUAGUAAUUAUCUAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
0.81%
ME_num:
MEP:
30.49%
HE_num:
HEP:
68.5%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.69
Avg Expression:
19.61
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 1.17382859740514 | 2.20032060804949e-09 |
2 | Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days" | -1.35805640361726 | 0.00146705649278961 |