Chr:
Chr3
Start:
1270230
End:
1271072
Strand:
+
Ref_name:
LOC9270432
Sequence
(XR_001544581.1):
GGCCUUGUGCAGAGAAUCUCAACUGAGAUAUGUUCAGCAUAUGUUUGCUCCAACAUCACAUCAAAUACCAAGCCACAAUCAAGCAGGAGUACAAGUAUGCACUUGAGAUCUCUCGAUUUAGAUUUAGAUGGGUAGUGGAGUCUGCCGAUCGAAGGGUUUCUGCCUGGUGGUGCUGAAUGGGUGGGUGCAUAUGCGUCUAGCAUUUCGCAUCCAUGGACGACAAUACGGAGAUCCAGCUUAUUCCUGGCCUGUUACUUAAGAAUGGGGCAUCGCUUGGCUAUCUUCUGCAGCACCGCCGCUGGAGCGACUUCUGCCAGGCAGCCCUAUGAAUAGCUCAGUUUCGACAUCCAUGUUGUCGUUGGUGGUGUUGAUGUUACGGUCCGGGUUCUCAUCUUCGGCCCGGACAGUCAAAGGAGCAGACAAGGGAGGCUGAUUCUUACACUGCACAAAGUUCAUGAUCAAGGGAAGCAAAUCAGCUUCAUCUCCUGGUCGAUGUUAAUGCAAAAAAGAGACAAACACGACAUUAGGAACAGAUGAUUGGUCCUGCGUUUCAGGUUAUAUAUAUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
42.48%
ME_num:
MEP:
45.53%
HE_num:
HEP:
11.79%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.89
Avg Expression:
13.19
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 2.9413630566497 | 0.00104745202414013 |