Chr:
Chr1
Start:
21956758
End:
21963354
Strand:
+
Ref_name:
LOC9270426
Sequence
(XR_001542464.2):
CAGUUGUAUUGUCAGGCUAGCAGCGCCCGCCAACCGGCACUGAGGUAAGGAGUUCCACAACCACAGCACUCAGAUGCAAAUAAUGGGCAUGCCUCUGUCUAAGCUGCUAAGUAGAGAAGCACACUGCAAAUAAGAGCUGAGUGAGCUAGGACCUGCCAAUCUCUGUUUUCUCUUGUUCUUGGAUUGCAAUUUUUGAUUUUAGAUUGGAUAUUUGAGAGAAUGCAUAGGAAAGGGAAAGGAAAAGGGAAAGGGAUGCCUUUACAUUAUACUUAUCUUUCCUUACGUUACCCAUCUCAGAUGUGGUCAUAGUAAUAUACUUUUUCCUUUGUGCCACUUAUCUUUCCUUUCUAUGCUCCACUGAUAUAUCAGCUGGUCCAUGUGCCAUUUGGUGAUUGCUGCUUACAUAGUUGUUUUUAUUUAUCUCCGUACGCUAUGUGAUGUUAUAUUCCCUUCUCGAUAUAUGUUCAGCCAUUCAAUCAGUUUUGAUUAGUUAAUGUUCAUGCAUCAGAUUUGUUAAUACAAAAUGUUCUCUGAUCUGGUAUUCAGCUUGGCUACCAGUACAUGUUACAAGUUCAAUCCUCCACAAGCAAUUGAGAAAGGUUGCAGGUGAGAGGCAAGCAGAAGCAUGACAGGAAUAUUGAUUUACUUACAUGAUAACCGUUGUGCCAUUAGUUUCAUCUGCAUGUAACCUAAAUAAUUUCACGGUGCUCAACUGGAUCACUGCGGGUGUAGUUUCAUUGCUCAUUUCCCAUCCUUGGACAAUCGGAGGUCAUUGAGAUUAAACUCUGCUUGCUUCGCAUCCUCCAUAUGUUCAGCAUGGAUGGUGACUUUGCUCCAUUGCUUGAGCUUAUCAAGUUACACAGAAUGUAUGGGCUUUUGUUGGUCAUGGACGUUCCUUGGACAGUUGGAGAUCAUUGCGAUGUUGGUGUAAUUGGGCUUACUAAGUGCUCUGGUACUCAUGGGCUUCUUCCCUGUUUUGACACCUUUUUGUUAGUAUCAAUUCAGAGAGAGACAAUUUGCGUACAUCCCUUGGAUUUCAUGAUAUGGCCACAAUCAUGUCUUCCGCAGUUUUCGCAUCAAUGAGGCUGAAUGCAACAAAUCAAAGCUACUUGCAUAUAAGAUGCAGCGUGGAGAUAAUCUGAAGUUAAAAACUUCCCAUGGCUUGAAGAUAAAGAUCAAAAUCAAGGAAGUAGCUAGCACACUGUACAUGACGACAUGAUGGAAAUAAUUUGUAGAGGCAACUGGAUUAGAAACUGGAGAAACGAUUCUUUUCUGGAUGCCAUCACAGUCUAAAGCGUGUGUUAUGAUACUGAACAGACAAGGCCUUAUUAGAUGUCCAGUGAAGACCCCAUCCAACAGCUCAUCAGCGAACAAAAGGCCCCUUGAUCCAUCAGGUCAAUUAACCAGAGCAAGCACAUUUGACCAUGCAUCUCCUAGCAAAAGCGUUCCAUUUCUGAGGAAUGGAACAGGCAGUAACAAAAGAAAACCUAGCAGACACCUCCUUCUGCCACCAGAUUAAGCUCACAGCUGAAUUGAAGAGUUACAUCAAAGAGAUUGCAGAUUUUCUAGAAGAAUCAAACAAGUUCUAUGUCGUGCGUAUGAACAGAACAUUCAUGGAACAGGACAGAGUGUACUUUGCGACCGAGUUUUCAAAGAAAUACAUUGUGAACUUGGUUCGAGGCAAGACAGCAAACAUUAGAGUGCAGAUUGCAGGUCGACCCUCAACAACUUAACAUCAGGGUGGUUAGCUUUGCAGCAGCCAACAGCAUCAACUUACACAAUCUGCAUCUUCCACUUUUUAGGACAAGUCACCUCACGCUCACCAUAGAUGCUCUGUGAAAGUUACCUGCAUCUUCAGUAGUCGCUGCUAUUAUCUACACUGGAACAACUACUAUAAUUCUCUAUUAUCCUUUGCUUGCGGUCUAUCUAACUUCACUUGCUCUGUAAGCACGUGACCUAUAACUGCUUAUCAUUGUCCUCAGCUCCUUUUGUUAUCCAUAAGCUGAGUGAACAAUUAACCACUUUAUGUACAAACAGCUGGCUUGUUAUACUACAGCUACUAUGGUACUAUUUGUUGUUUCUUUUUACCA
Sequence
(XR_003243150.1):
UGGCAAUGUUUGCAGGCUAGCAGCGCCCGCCAACCGGCACUGAGGUAAGGAGUUCCACAACCACAGCACUCAGAUGCAAAUAAUGGGCAUGCCUCUGUCUAAGCUGCUAAGUAGAGAAGCACACUGCAAAUAAGAGCUGAGUGAGCUAGGACCUGCCAAUCUCUGUUUUCUCUUGUUCUUGGAUUGCAAUUUUUGAUUUUAGAUUGGAUAUUUGAGAGAAUGCAUAGGAAAGGGAAAGGAAAAGGGAAAGGGAUGCCUUUACAUUAUACUUAUCUUUCCUUACGUUACCCAUCUCAGAUGUGGUCAUAGUAAUAUACUUUUUCCUUUGUGCCACUUAUCUUUCCUUUCUAUGCUCCACUGAUAUAUCAGCUGGUCCAUGUGCCAUUUGGUGAUUGCUGCUUACAUAGUUGUUUUUAUUUAUCUCCGUACGCUAUGUGAUGUUAUAUUCCCUUCUCGAUAUAUGUUCAGCCAUUCAAUCAGUUUUGAUUAGUUAAUGUUCAUGCAUCAGAUUUGUUAAUACAAAAUGUUCUCUGAUCUGGUAUUCAGCUUGGCUACCAGUACAUGUUACAAGUUCAAUCCUCCACAAGCAAUUGAGAAAGGUUGCAGGUGAGAGGCAAGCAGAAGCAUGACAGGAAUAUUGAUUUACUUACAUGAUAACCGUUGUGCCAUUAGUUUCAUCUGCAUGUAACCUAAAUAAUUUCACGGUGCUCAACUGGAUCACUGCGGGUGUAGUUUCAUUGCUCAUUUCCCAUCCUUGGACAAUCGGAGGUCAUUGAGAUUAAACUCUGCUUGCUUCGCAUCCUCCAUAUGUUCAGCAUGGAUGGUGACUUUGCUCCAUUGCUUGAGCUUAUCAAGUUACACAGAAUGUAUGGGCUUUUGUUGGUCAUGGACGUUCCUUGGACAGUUGGAGAUCAUUGCGAUGUUGGUGUAAUUGGGCUUACUAAGUGCUCUGGUACUCAUGGGCUUCUUCCCUGUUUUGACACCUUUUUGUUAGUAUCAAUUCAGAGAGAGACAAUUUGCGUACAUCCCUUGGAUUUCAUGAUAUGGCCACAAUCAUGUCUUCCGCAGUUUUCGCAUCAAUGAGGCUGAAUGCAACAAAUCAAAGCUACUUGCAUAUAAGAUGCAGCGUGGAGAUAAUCUGAAGUUAAAAACUUCCCAUGGCUUGAAGAUAAAGAUCAAAAUCAAGGAAGUAGCUAGCACACUGUACAUGACGACAUGAUGGAAAUAAUUUGUAGAGGCAACUGGAUUAGAAACUGGAGAAACGAUUCUUUUCUGGAUGCCAUCACAGUCUAAAGCGUGUGUUAUGAUACUGAACAGACAAGGCCUUAUUAGAUGUCCAGUGAAGACCCCAUCCAACAGCUCAUCAGCGAACAAAAGGCCCCUUGAUCCAUCAGGUCAAUUAACCAGAGCAAGCACAUUUGACCAUGCAUCUCCUAGCAAAAGCGUUCCAUUUCUGAGGAAUGGAACAGGCAGUAACAAAAGAAAACCUAGCAGACACCUCCUUCUGCCACCAGAUUAAGCUCACAGCUGAAUUGAAGAGUUACAUCAAAGAGAUUGCAGAUUUUCUAGAAGAAUCAAACAAGUUCUAUGUCGUGCGUAUGAACAGAACAUUCAUGGAACAGGACAGAGUGUACUUUGCGACCGAGUUUUCAAAGAAAUACAUUGUGAACUUGGUUCGAGGCAAGACAGCAAACAUUAGAGUGCAGAUUGCAGGUCGACCCUCAACAACUUAACAUCAGGGUGGUUAGCUUUGCAGCAGCCAACAGCAUCAACUUACACAAUCUGCAUCUUCCACUUUUUAGGACAAGUCACCUCACGCUCACCAUAGAUGCUCUGUGAAAGUUACCUGCAUCUUCAGUAGUCGCUGCUAUUAUCUACACUGGAACAACUACUAUAAUUCUCUAUUAUCCUUUGCUUGCGGUCUAUCUAACUUCACUUGCUCUGUAAGCACGUGACCUAUAACUGCUUAUCAUUGUCCUCAGCUCCUUUUGUUAUCCAUAAGCUGAGUGAACAAUUAACCACUUUAUGUACAAACAGCUGGCUUGUUAUACUACAGCUACUAUGGUACUAUUUGUUGUUUCUUUUUACCA
Sequence
(XR_003243151.1):
UGGCAAUGUUUGCAGGCUAGCAGCGCCCGCCAACCGGCACUGAGCUUGGCUACCAGUACAUGUUACAAGUUCAAUCCUCCACAAGCAAUUGAGAAAGGUUGCAGGUGAGAGGCAAGCAGAAGCAUGACAGGAAUAUUGAUUUACUUACAUGAUAACCGUUGUGCCAUUAGUUUCAUCUGCAUGUAACCUAAAUAAUUUCACGGUGCUCAACUGGAUCACUGCGGGUGUAGUUUCAUUGCUCAUUUCCCAUCCUUGGACAAUCGGAGGUCAUUGAGAUUAAACUCUGCUUGCUUCGCAUCCUCCAUAUGUUCAGCAUGGAUGGUGACUUUGCUCCAUUGCUUGAGCUUAUCAAGUUACACAGAAUGUAUGGGCUUUUGUUGGUCAUGGACGUUCCUUGGACAGUUGGAGAUCAUUGCGAUGUUGGUGUAAUUGGGCUUACUAAGUGCUCUGGUACUCAUGGGCUUCUUCCCUGUUUUGACACCUUUUUGUUAGUAUCAAUUCAGAGAGAGACAAUUUGCGUACAUCCCUUGGAUUUCAUGAUAUGGCCACAAUCAUGUCUUCCGCAGUUUUCGCAUCAAUGAGGCUGAAUGCAACAAAUCAAAGCUACUUGCAUAUAAGAUGCAGCGUGGAGAUAAUCUGAAGUUAAAAACUUCCCAUGGCUUGAAGAUAAAGAUCAAAAUCAAGGAAGUAGCUAGCACACUGUACAUGACGACAUGAUGGAAAUAAUUUGUAGAGGCAACUGGAUUAGAAACUGGAGAAACGAUUCUUUUCUGGAUGCCAUCACAGUCUAAAGCGUGUGUUAUGAUACUGAACAGACAAGGCCUUAUUAGAUGUCCAGUGAAGACCCCAUCCAACAGCUCAUCAGCGAACAAAAGGCCCCUUGAUCCAUCAGGUCAAUUAACCAGAGCAAGCACAUUUGACCAUGCAUCUCCUAGCAAAAGCGUUCCAUUUCUGAGGAAUGGAACAGGCAGUAACAAAAGAAAACCUAGCAGACACCUCCUUCUGCCACCAGAUUAAGCUCACAGCUGAAUUGAAGAGUUACAUCAAAGAGAUUGCAGAUUUUCUAGAAGAAUCAAACAAGUUCUAUGUCGUGCGUAUGAACAGAACAUUCAUGGAACAGGACAGAGUGUACUUUGCGACCGAGUUUUCAAAGAAAUACAUUGUGAACUUGGUUCGAGGCAAGACAGCAAACAUUAGAGUGCAGAUUGCAGGUCGACCCUCAACAACUUAACAUCAGGGUGGUUAGCUUUGCAGCAGCCAACAGCAUCAACUUACACAAUCUGCAUCUUCCACUUUUUAGGACAAGUCACCUCACGCUCACCAUAGAUGCUCUGUGAAAGUUACCUGCAUCUUCAGUAGUCGCUGCUAUUAUCUACACUGGAACAACUACUAUAAUUCUCUAUUAUCCUUUGCUUGCGGUCUAUCUAACUUCACUUGCUCUGUAAGCACGUGACCUAUAACUGCUUAUCAUUGUCCUCAGCUCCUUUUGUUAUCCAUAAGCUGAGUGAACAAUUAACCACUUUAUGUACAAACAGCUGGCUUGUUAUACUACAGCUACUAUGGUACUAUUUGUUGUUUCUUUUUACCA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
0.41%
ME_num:
MEP:
6.91%
HE_num:
HEP:
92.48%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
carpel
Tau :
0.83
Avg Expression:
163.57
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 1.47993810819733 | 2.08540655168332e-15 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 1.17764482252184 | 1.91040110945633e-10 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 1.60716300668638 | 5.71182024724424e-22 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 1.64871731153254 | 8.4097473405495e-12 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 1.77708463605853 | 2.37226001430555e-22 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 1.31493918514801 | 3.25850922053977e-12 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 1.41176998313743 | 4.02889425909302e-16 |
| 8 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.10719361433095 | 0.000104536369865941 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 1.51807328743363 | 7.32749622424364e-21 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 1.41816228132585 | 6.83189047190198e-16 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 1.54487028943669 | 1.34562236186489e-17 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 1.37775896866518 | 4.54777173607554e-19 |