Chr:
Chr6
Start:
13910237
End:
13912479
Strand:
-
Ref_name:
LOC9270325
Sequence
(XR_001546510.2):
CCGCCUCCACCCCCACCCCCAGCAAGCAGUCCCGCACACCCCACCCCCUCCUUUUGGUUGCUCCUCCUCAUAGUAACCUGUUUACUAUACAGUCACCCGUCGGCGACGGGCGGUCGAGCGGCGGGCGGCCUCCGGCUUUUGCUUCCUCGGCGUGCCGGGUGGUAGGCGGUGGCGAUGGUGCGCCAGAUCCGAUCUCAACGCCUCCGAAUGGCAGUGGCUGGAUAACCCCUGAUUUUUUACUCCAAUCGGAGGGGUGUGUUGCGGCCCUAGCAAUUUGCCGGCGUUGUCAAGGCUCCCCUCCAUGAACGGCAGCUCCAUCUCCGCGUAGGCCCAUGUCAAGAGGCGCUGGAGGCAGAUCGACGGCCUGAUGAUAGCGCAUGUCUCCAAUGCCAGAGAUCCCUCACUCAUUCGCUGCCUGGAGUACUGGAGGCCUGGUCAAUGCAGCUGAGGGCUCCUCCGCCGGCAGUGGGGAUGCCACCAGAUGUCAGCCUUGUGGCUGUCUGCUUGGAGUGUCAAUGUCGAAGAGGAGGAGCUUCAUUCUUUUUUGUUUGAUUUUCAAUUUCGUGCUCCAAUGAUCUGCAGCUCAUCCCUAUCUCGAUGAUUACAUCUUCUCCCCGCAGUGAGUAUUUCCGGCAGCGAUUUCUUCUGUGUUCCUACGCCUAAUAGAGAUUUUUGGAAUCGGGGAAUUAGUACUAAUAUUUCCGUUUGAUUCCACACCAGCCCAUUCAGAGUCAAUUUGUGAUGACCAAGUGGAGCCCCUUUCGUCUACUGUAGUUUGCGCAGUACCUCUCAGCUGAAUCAGGAUGUUUUUUUCAUUAGAUUUUUUUUCUCCAUUCUGCAAGCGAUUCGACCCUAACUCCAACAAUUCAACUAAUAUAAAUGGGUACACGAGCAAUGGUGAAUGAGCUCCUCUAAAACCAGAUUAGGUCUACAAAAUUCCUGCAUGUGUUUUUUUUUUCAUUCUGAACAUAGCACUAUGCAAUCAAUAUCAUGGAUUUAAGUUAAUUCACAUAUAUAUUGGUUUAGAUUUAGUCAGGUUUCGUGCAGGAGAUCAAAAGAGGGAUUAUGAGUGGAUUCAAAGGUUUAGUGUUGAGGAAUCCAGAACACACUGUAGGCUACUGUCCCUAAUUGUUGCUGCGGCUUCAAAUAGCAAGUUUAUCUUUGAGAAUAAUCAUGACACCAGCACCAGAAGAACCCAGAAAAACCAUGAGAUUCUUGUUAGUGAGCAAUAUCAUUCUGGUAGUACUGUUUACUUUCUGUUUUUUUCAAAUAUCAUAUCUCCUGUAACUGAUUUGUACUAAUGCUUGUUUAGCUUUCUUGAUUCGAGCCCUGCUUUGCCUUGUGUAUUGAAGUUCACUCACUACAUAAAAAGCACAAUAACUGAAGAUAAUUUGCUUCUAAUCAUGUCAUGCAUACAUCUUCACUGAAAUUCUACAGGGCGCUAUGGAUAGAUGAUGGACGGGCAUGACCCAAUUAUGGGUGCACUGGAAUGUUGCUUUCUCUUGUGGAAUACUCUGUAAAAUUGAGCUUGACUACCUAUUAAUUGUUUUUGGUGGUGCUGCCCAAUAAUAUUGUGUCAUUUGUCCAAUUCAUUCUAUUUUAUGAACUACUAUCAUUGACAGGCUACUAUAUUUAUUGCCUGAAAUGUUUAUUAUGGAGAUGCACAUGCCUAAAAUGUUUUCAUGAUAUGCAUUGUGUUUGCGUUUGUUUCAGACGGAAUGUUGAGAACCAUCGAUGUAAUAGUAAUUUAGUUACUAAGAGAUAGUAUGUUUGAGAACCAUCGGUGUAAUAUUGACUUUGUUACUAAGAAAUUUGAUAGCAAGAUUAAUAUGUUAUGUUGAGAACCAUUGGUGUAAUUAAGUUACUAAGAGACAAAAUAUUGAGAACCAUCAGUGUAACAGUAACUUGGUUACUAAGAGAAAUUUUGUGGCAAGAUCAAUA
Sequence
(XR_003243160.1):
CUCCACCCCCACCCCCAGCAAGCAGUCCCGCACACCCCACCCCCUCCUUUUGGUUGCUCCUCCUCAUAGUCGGCGACGGGCGGUCGAGCGGCGGGCGGCCUCCGGCUUUUGCUUCCUCGGCGUGCCGGGUGGUAGGCGGUGGCGAUGGUGCGCCAGAUCCGAUCUCAACGCCUCCGAAUGGCAGUGGCUGGAUAACCCCUGAUUUUUUACUCCAAUCGGAGGGGUGUGUUGCGGCCCUAGCAAUUUGCCGGCGUUGUCAAGGCUCCCCUCCAUGAACGGCAGCUCCAUCUCCGCGUAGGCCCAUGUCAAGAGGCGCUGGAGGCAGAUCGACGGCCUGAUGAUAGCGCAUGUCUCCAAUGCCAGAGAUCCCUCACUCAUUCGCUGCCUGGAGUACUGGAGGCCUGGUCAAUGCAGCUGAGGGCUCCUCCGCCGGCAGUGGGGAUGCCACCAGAUGUCAGCCUUGUGGCUGUCUGCUUGGAGUGUCAAUGUCGAAGAGGAGGAGCUUCAUUCUUUUUUGUUUGAUUUUCAAUUUCGUGCUCCAAUGAUCUGCAGCUCAUCCCUAUCUCGAUGAUUACAUCUUCUCCCCGCAGUGAGUAUUUCCGGCAGCGAUUUCUUCUGUGUUCCUACGCCUAAUAGAGAUUUUUGGAAUCGGGGAAUUAGUACUAAUAUUUCCGUUUGAUUCCACACCAGCCCAUUCAGAGUCAAUUUGUGAUGACCAAGUGGAGCCCCUUUCGUCUACUGUAGUUUGCGCAGUACCUCUCAGCUGAAUCAGGAUGUUUUUUUCAUUAGAUUUUUUUUCUCCAUUCUGCAAGCGAUUCGACCCUAACUCCAACAAUUCAACUAAUAUAAAUGGGUACACGAGCAAUGGUGAAUGAGCUCCUCUAAAACCAGAUUAGGUCUACAAAAUUCCUGCAUGUGUUUUUUUUUUCAUUCUGAACAUAGCACUAUGCAAUCAAUAUCAUGGAUUUAAGUUAAUUCACAUAUAUAUUGGUUUAGAUUUAGUCAGGUUUCGUGCAGGAGAUCAAAAGAGGGAUUAUGAGUGGAUUCAAAGGUUUAGUGUUGAGGAAUCCAGAACACACUGUAGGCUACUGUCCCUAAUUGUUGCUGCGGCUUCAAAUAGCAAGUUUAUCUUUGAGAAUAAUCAUGACACCAGCACCAGAAGAACCCAGAAAAACCAUGAGAUUCUUGUUAGUGAGCAAUAUCAUUCUGGUAGUACUGUUUACUUUCUGUUUUUUUCAAAUAUCAUAUCUCCUGUAACUGAUUUGUACUAAUGCUUGUUUAGCUUUCUUGAUUCGAGCCCUGCUUUGCCUUGUGUAUUGAAGUUCACUCACUACAUAAAAAGCACAAUAACUGAAGAUAAUUUGCUUCUAAUCAUGUCAUGCAUACAUCUUCACUGAAAUUCUACAGGGCGCUAUGGAUAGAUGAUGGACGGGCAUGACCCAAUUAUGGGUGCACUGGAAUGUUGCUUUCUCUUGUGGAAUACUCUGUAAAAUUGAGCUUGACUACCUAUUAAUUGUUUUUGGUGGUGCUGCCCAAUAAUAUUGUGUCAUUUGUCCAAUUCAUUCUAUUUUAUGAACUACUAUCAUUGACAGGCUACUAUAUUUAUUGCCUGAAAUGUUUAUUAUGGAGAUGCACAUGCCUAAAAUGUUUUCAUGAUAUGCAUUGUGUUUGCGUUUGUUUCAGACGGAAUGUUGAGAACCAUCGAUGUAAUAGUAAUUUAGUUACUAAGAGAUAGUAUGUUUGAGAACCAUCGGUGUAAUAUUGACUUUGUUACUAAGAAAUUUGAUAGCAAGAUUAAUAUGUUAUGUUGAGAACCAUUGGUGUAAUUAAGUUACUAAGAGACAAAAUAUUGAGAACCAUCAGUGUAACAGUAACUUGGUUACUAAGAGAAAUUUUGUGGCAAGAUCAAUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
3.25%
ME_num:
MEP:
44.31%
HE_num:
HEP:
52.24%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
root
Tau :
0.49
Avg Expression:
16.22
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 1.71905238280626 | 5.32244990517109e-14 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 1.92401490546032 | 1.98595085750984e-20 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 1.50537254951422 | 1.69695453853212e-11 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 1.41328147574742 | 5.80959714351158e-08 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 1.73624583002695 | 2.99626639732965e-17 |
| 6 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | 2.14745135464931 | 0.0230487936561912 |
| 7 | BR-IRGA_409 // spikelet // control condition (29C) for 7 hrs--/--BR-IRGA_409 // spikelet // high temperature treatment (38C) for 7 hrs | 1.04068353616578 | 4.54664274046649e-05 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 1.50315307014406 | 2.38680093778158e-12 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 1.5169287295581 | 2.27097383234819e-09 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 1.05589566939411 | 2.3644096852721e-06 |