OSA-LNC9270205


Function Link


Basic Info

Chr:

Chr12

Start:

21525270

End:

21528006

Strand:

-

Ref_name:

LOC9270205

Sequence
(XR_001541753.2):

GUAUACGGGGAGAAAAAAAAUAAAGCAAUGGAAGUAAAGUCAACAGGGAGGGUAAAAUAAGAAAGCAACAGCAAGAGUCUCUCGUCUCUUCCGAUGAUAUUUCUCCCAGUCUCUAACGGUCUCUCCUUGACUCUCCCUCCUCCCCUCCCACUCACCCAGACCAAACAACUCUCUCCCUCAGUCCCUCCUCCCUCCUGCCCUCUCACUCACUGGAUCCCCAUGGCUUUCCUCCUCAUAGGACUUGGAUUUGGGCAUCCUGCGGCUCUCCAGCGAAAUGAUCGGUGGUGGCUGUUUUGGUGAUGGCGGCAUCGGCGGCGACGGGAGGGGCGGAUCCAGCGACCUCUUCCCCUCCCUCACAUAUCCCAUCGUCUGUUCGCUCCCCUCUCGCGCGGAUCCGCCGUCGGCGGCGAUGGGAGGGGCGGAUCCGGUGACCUCUUCUCCUCCCUCACAUAUCCCAUCGCUUGUUCACCCCCUCUUGCGCGGAUCCACCGUCGGCGGCGAUGGGAGGGGCGGAUACAGCAACCUCUUCCCCUCCCGCGCUGAUCCCGUCGUCUGUUCGCCCCCCUCCCCCCCCCCUCUCGCGCGGAUCCGCCGUCGGCGAUUAUGGGAGGGGCGGAUCCGGCGACCUCUUCCCCUCCCACGCUGAUCCCGUCAUCUCUCCGCCCCCCUCUCGCAUGGAUCAGCCAUCGGCAGCUACGGGAGCGUCGGAUCUUGUGACCACUUCCCCUCCCGCAUGGAUCCCGUCAUCUCUCCGCCCCCUCUCGCGCAGAUUUGCCAGUAGCUGUCCGGCUGGUCGGAGAGAAGGUUUCAAGAUGGCGGACGAAGGUUGACCUGUGGUUCUGCUGAUGAGGAGGCCAUGGCCGUCGGAUCCUGUGAGAGCGGACUCCCCGUUAGCUGUUCGGCUGGCUGGAGAGGAGCUUUCAAGAUGGUGGACCGAGGAGAGCGCGGCUGAGUGGUGCCAUUGAAGAUAGUGGGCGUUUCUUCAUGAUUUCAUAUUAACUUUGGGAUCUUUGGUACUGGUGGUUAUUUGGGCAGCUAUGGGGGUCUUGAUGGGUAUGACAAUACUCUACCAGGAAUUCAGAUAAGGUCACUGCGAAAGUUAUAGCCAUAUACUACAGGUACUGAACCACGUCCUUUGUACAGCGCCGAGGUAGGCCUGCUGUGGGGUGCUUUGUGUUGUGGAUAUUGGGCGUGGACCAGAAGCUGAUUAUGUGGUGUUUCACCGCGUGAAAUUGCACUACCAUGUCAAAUAUUAAAAAUUGCAUUUAUAGCUGUGAUUGGAACUCAGAAACUUUGACUACCAAGACAAGAGAUCAAGAUGCCUGGAAUGGCAUUGUGAAUUUGUGAUCCCCAAUACAAUUGAAGUUGUUCACGGAGCUGCUCUUGGCACGAUGGCUUCUUUGGUGUUGGAGUAGAACUCUUUGAAUGCUUUUUUUGUCACACCACAAGAACAAAUUUUAUUUGUGGUACCAGUUUUGUUUGUAUAUAUAUAGGAUAGGAUGUAUGCAGCGUUCCUGUGGUGUUCGAAUGUAAUAUUGUGGGGGGGGGGGGGGGGGGGGGGAGUUCCUGUCUACGUUACCCCGAUACUUCACUGAAGUCACACAUCCGUAUCGGAUACUCCAACGGAUACGGAUACGCUCCAAUACGUAUCCCGUACGUAUCCUGCACUUUCCCAAUUUUCAAUUAAAUAAAACAACCACGGAUACAUUUCGAAUA

Sequence
(XR_001541754.2):

GUAUACGGGGAGAAAAAAAAUAAAGCAAUGGAAGUAAAGUCAACAGGGAGGGUAAAAUAAGAAAGCAACAGCAAGAGUCUCUCGUCUCUUCCGAUGAUAUUUCUCCCAGUCUCUAACGGUCUCUCCUUGACUCUCCCUCCUCCCCUCCCACUCACCCAGACCAAACAACUCUCUCCCUCAGUCCCUCCUCCCUCCUGCCCUCUCACUCACUGGAUCCCCAUGGCUUUCCUCCUCAUAGGACUUGGAUUUGGGCAUCCUGCGGCUCUCCAGCGAAAUGAUCGGUGGUGGCUGUUUUGGUGAUGGCGGCAUCGGCGGCGACGGGAGGGGCGGAUCCAGCGACCUCUUCCCCUCCCUCACAUAUCCCAUCGUCUGUUCGCUCCCCUCUCGCGCGGAUCCGCCGUCGGCGGCGAUGGGAGGGGCGGAUCCGGUGACCUCUUCUCCUCCCUCACAUAUCCCAUCGCUUGUUCACCCCCUCUUGCGCGGAUCCACCGUCGGCGGCGAUGGGAGGGGCGGAUACAGCAACCUCUUCCCCUCCCGCGCUGAUCCCGUCGUCUGUUCGCCCCCCUCCCCCCCCCCUCUCGCGCGGAUCCGCCGUCGGCGAUUAUGGGAGGGGCGGAUCCGGCGACCUCUUCCCCUCCCACGCUGAUCCCGUCAUCUCUCCGCCCCCCUCUCGCAUGGAUCAGCCAUCGGCAGCUACGGGAGCGUCGGAUCUUGUGACCACUUCCCCUCCCGCAUGGAUCCCGUCAUCUCUCCGCCCCCUCUCGCGCAGAUUUGCCAGUAGCUGUCCGGCUGGUCGGAGAGAAGGUUUCAAGAUGGCGGACGAAGGUUGACCUGUGGUUCUGCUGAUGAGGAGGCCAUGGCCGUCGGAUCCUGUGAGAGCGGACUCCCCGUUAGCUGUUCGGCUGGCUGGAGAGGAGCUUUCAAGAUGGUGGACCGAGGAGAGCGCGGCUGAGUGGUGCCAUUGAAGAUAGUGGGCGUUUCUUCAUGAUUUCAUAUUAACUUUGGGAUCUUUGGUACUGGUGGUUAUUUGGGCAGCUAUGGGGGUCUUGAUGGGUAUGACAAUACUCUACCAGGAAUUCAGAUAAGGUCACUGCGAAAGUUAUAGCCAUAUACUACAGCGCCGAGGUAGGCCUGCUGUGGGGUGCUUUGUGUUGUGGAUAUUGGGCGUGGACCAGAAGCUGAUUAUGUGGUGUUUCACCGCGUGAAAUUGCACUACCAUGUCAAAUAUUAAAAAUUGCAUUUAUAGCUGUGAUUGGAACUCAGAAACUUUGACUACCAAGACAAGAGAUCAAGAUGCCUGGAAUGGCAUUGUGAAUUUGUGAUCCCCAAUACAAUUGAAGUUGUUCACGGAGCUGCUCUUGGCACGAUGGCUUCUUUGGUGUUGGAGUAGAACUCUUUGAAUGCUUUUUUUGUCACACCACAAGAACAAAUUUUAUUUGUGGUACCAGUUUUGUUUGUAUAUAUAUAGGAUAGGAUGUAUGCAGCGUUCCUGUGGUGUUCGAAUGUAAUAUUGUGGGGGGGGGGGGGGGGGGGGGGAGUUCCUGUCUACGUUACCCCGAUACUUCACUGAAGUCACACAUCCGUAUCGGAUACUCCAACGGAUACGGAUACGCUCCAAUACGUAUCCCGUACGUAUCCUGCACUUUCCCAAUUUUCAAUUAAAUAAAACAACCACGGAUACAUUUCGAAUA


Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

17

LEP:

3.46%

ME_num:

53

MEP:

10.77%

HE_num:

421

HEP:

85.57%

Type:

HCR (High-Capacity ncRNA)


Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

shoot_apical_meristem

Tau :

0.66

Avg Expression:

47.88

Tip: OSA-LNC9270205 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN1.417168513926798.7787006809992e-07
2Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN1.082119212137820.000233774440553962
3Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1.529186840839841.34533245335025e-07
4Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN1.439945941211376.94841649824718e-06
5Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN1.158055292676517.20872632715951e-05