Chr:
Chr12
Start:
21525270
End:
21528006
Strand:
-
Ref_name:
LOC9270205
Sequence
(XR_001541753.2):
GUAUACGGGGAGAAAAAAAAUAAAGCAAUGGAAGUAAAGUCAACAGGGAGGGUAAAAUAAGAAAGCAACAGCAAGAGUCUCUCGUCUCUUCCGAUGAUAUUUCUCCCAGUCUCUAACGGUCUCUCCUUGACUCUCCCUCCUCCCCUCCCACUCACCCAGACCAAACAACUCUCUCCCUCAGUCCCUCCUCCCUCCUGCCCUCUCACUCACUGGAUCCCCAUGGCUUUCCUCCUCAUAGGACUUGGAUUUGGGCAUCCUGCGGCUCUCCAGCGAAAUGAUCGGUGGUGGCUGUUUUGGUGAUGGCGGCAUCGGCGGCGACGGGAGGGGCGGAUCCAGCGACCUCUUCCCCUCCCUCACAUAUCCCAUCGUCUGUUCGCUCCCCUCUCGCGCGGAUCCGCCGUCGGCGGCGAUGGGAGGGGCGGAUCCGGUGACCUCUUCUCCUCCCUCACAUAUCCCAUCGCUUGUUCACCCCCUCUUGCGCGGAUCCACCGUCGGCGGCGAUGGGAGGGGCGGAUACAGCAACCUCUUCCCCUCCCGCGCUGAUCCCGUCGUCUGUUCGCCCCCCUCCCCCCCCCCUCUCGCGCGGAUCCGCCGUCGGCGAUUAUGGGAGGGGCGGAUCCGGCGACCUCUUCCCCUCCCACGCUGAUCCCGUCAUCUCUCCGCCCCCCUCUCGCAUGGAUCAGCCAUCGGCAGCUACGGGAGCGUCGGAUCUUGUGACCACUUCCCCUCCCGCAUGGAUCCCGUCAUCUCUCCGCCCCCUCUCGCGCAGAUUUGCCAGUAGCUGUCCGGCUGGUCGGAGAGAAGGUUUCAAGAUGGCGGACGAAGGUUGACCUGUGGUUCUGCUGAUGAGGAGGCCAUGGCCGUCGGAUCCUGUGAGAGCGGACUCCCCGUUAGCUGUUCGGCUGGCUGGAGAGGAGCUUUCAAGAUGGUGGACCGAGGAGAGCGCGGCUGAGUGGUGCCAUUGAAGAUAGUGGGCGUUUCUUCAUGAUUUCAUAUUAACUUUGGGAUCUUUGGUACUGGUGGUUAUUUGGGCAGCUAUGGGGGUCUUGAUGGGUAUGACAAUACUCUACCAGGAAUUCAGAUAAGGUCACUGCGAAAGUUAUAGCCAUAUACUACAGGUACUGAACCACGUCCUUUGUACAGCGCCGAGGUAGGCCUGCUGUGGGGUGCUUUGUGUUGUGGAUAUUGGGCGUGGACCAGAAGCUGAUUAUGUGGUGUUUCACCGCGUGAAAUUGCACUACCAUGUCAAAUAUUAAAAAUUGCAUUUAUAGCUGUGAUUGGAACUCAGAAACUUUGACUACCAAGACAAGAGAUCAAGAUGCCUGGAAUGGCAUUGUGAAUUUGUGAUCCCCAAUACAAUUGAAGUUGUUCACGGAGCUGCUCUUGGCACGAUGGCUUCUUUGGUGUUGGAGUAGAACUCUUUGAAUGCUUUUUUUGUCACACCACAAGAACAAAUUUUAUUUGUGGUACCAGUUUUGUUUGUAUAUAUAUAGGAUAGGAUGUAUGCAGCGUUCCUGUGGUGUUCGAAUGUAAUAUUGUGGGGGGGGGGGGGGGGGGGGGGAGUUCCUGUCUACGUUACCCCGAUACUUCACUGAAGUCACACAUCCGUAUCGGAUACUCCAACGGAUACGGAUACGCUCCAAUACGUAUCCCGUACGUAUCCUGCACUUUCCCAAUUUUCAAUUAAAUAAAACAACCACGGAUACAUUUCGAAUA
Sequence
(XR_001541754.2):
GUAUACGGGGAGAAAAAAAAUAAAGCAAUGGAAGUAAAGUCAACAGGGAGGGUAAAAUAAGAAAGCAACAGCAAGAGUCUCUCGUCUCUUCCGAUGAUAUUUCUCCCAGUCUCUAACGGUCUCUCCUUGACUCUCCCUCCUCCCCUCCCACUCACCCAGACCAAACAACUCUCUCCCUCAGUCCCUCCUCCCUCCUGCCCUCUCACUCACUGGAUCCCCAUGGCUUUCCUCCUCAUAGGACUUGGAUUUGGGCAUCCUGCGGCUCUCCAGCGAAAUGAUCGGUGGUGGCUGUUUUGGUGAUGGCGGCAUCGGCGGCGACGGGAGGGGCGGAUCCAGCGACCUCUUCCCCUCCCUCACAUAUCCCAUCGUCUGUUCGCUCCCCUCUCGCGCGGAUCCGCCGUCGGCGGCGAUGGGAGGGGCGGAUCCGGUGACCUCUUCUCCUCCCUCACAUAUCCCAUCGCUUGUUCACCCCCUCUUGCGCGGAUCCACCGUCGGCGGCGAUGGGAGGGGCGGAUACAGCAACCUCUUCCCCUCCCGCGCUGAUCCCGUCGUCUGUUCGCCCCCCUCCCCCCCCCCUCUCGCGCGGAUCCGCCGUCGGCGAUUAUGGGAGGGGCGGAUCCGGCGACCUCUUCCCCUCCCACGCUGAUCCCGUCAUCUCUCCGCCCCCCUCUCGCAUGGAUCAGCCAUCGGCAGCUACGGGAGCGUCGGAUCUUGUGACCACUUCCCCUCCCGCAUGGAUCCCGUCAUCUCUCCGCCCCCUCUCGCGCAGAUUUGCCAGUAGCUGUCCGGCUGGUCGGAGAGAAGGUUUCAAGAUGGCGGACGAAGGUUGACCUGUGGUUCUGCUGAUGAGGAGGCCAUGGCCGUCGGAUCCUGUGAGAGCGGACUCCCCGUUAGCUGUUCGGCUGGCUGGAGAGGAGCUUUCAAGAUGGUGGACCGAGGAGAGCGCGGCUGAGUGGUGCCAUUGAAGAUAGUGGGCGUUUCUUCAUGAUUUCAUAUUAACUUUGGGAUCUUUGGUACUGGUGGUUAUUUGGGCAGCUAUGGGGGUCUUGAUGGGUAUGACAAUACUCUACCAGGAAUUCAGAUAAGGUCACUGCGAAAGUUAUAGCCAUAUACUACAGCGCCGAGGUAGGCCUGCUGUGGGGUGCUUUGUGUUGUGGAUAUUGGGCGUGGACCAGAAGCUGAUUAUGUGGUGUUUCACCGCGUGAAAUUGCACUACCAUGUCAAAUAUUAAAAAUUGCAUUUAUAGCUGUGAUUGGAACUCAGAAACUUUGACUACCAAGACAAGAGAUCAAGAUGCCUGGAAUGGCAUUGUGAAUUUGUGAUCCCCAAUACAAUUGAAGUUGUUCACGGAGCUGCUCUUGGCACGAUGGCUUCUUUGGUGUUGGAGUAGAACUCUUUGAAUGCUUUUUUUGUCACACCACAAGAACAAAUUUUAUUUGUGGUACCAGUUUUGUUUGUAUAUAUAUAGGAUAGGAUGUAUGCAGCGUUCCUGUGGUGUUCGAAUGUAAUAUUGUGGGGGGGGGGGGGGGGGGGGGGAGUUCCUGUCUACGUUACCCCGAUACUUCACUGAAGUCACACAUCCGUAUCGGAUACUCCAACGGAUACGGAUACGCUCCAAUACGUAUCCCGUACGUAUCCUGCACUUUCCCAAUUUUCAAUUAAAUAAAACAACCACGGAUACAUUUCGAAUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
3.46%
ME_num:
MEP:
10.77%
HE_num:
HEP:
85.57%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot_apical_meristem
Tau :
0.66
Avg Expression:
47.88
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 1.41716851392679 | 8.7787006809992e-07 |
2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 1.08211921213782 | 0.000233774440553962 |
3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 1.52918684083984 | 1.34533245335025e-07 |
4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 1.43994594121137 | 6.94841649824718e-06 |
5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 1.15805529267651 | 7.20872632715951e-05 |