Chr:
Chr11
Start:
2451944
End:
2455669
Strand:
+
Ref_name:
LOC9270175
Sequence
(XR_001541600.2):
GUACGCGGCGUCGUCAGCCCACUCGCCGCACAUCCUCGGCGAGGUCGCCGGCGAUGGCGCCGCCACCGCCAGGGCGGCAGCGGCUGCCCUGCGACGGCGAGGAGGACGCCCCCCCCCCUCUCCACCGCCGCCGGUGAGGGCCUCCUCCGUCCAGCGAUCGCUUCCGGCGGGACGUACGGGGCCCGCCGCGAGCCUGAUAUACUGGCUGCUGAUGUAGCAGAAGAACGUUGAUUCAUGAGAAAGUAAUAUGGCAGAAAAGGUUUGAUUUCAGAGAAUCGUAAUUUUGGGACAAUUGGAGCUGCAUUUCUCAGCGCCUCCUGGCUGCAGUCUCUCUCUGGGCAUUGAAGUAGACAGCAGCCACAGGAAGGCCAAGAUCAUUCUCCUCGGCGAACCGGCGGGUGUUGAAAUGGUCCCUGAAGGAUGGCACAAUUACAGUUUGCCUGCGCUUCUGCUUGAAGAGCACAAAAAUGAACCUAUGGAUGCCAAUGUUCGGCUUUGGACUCUCAUAGCUUAUGACCUCGCGUCCUUCAAUCGGAAAGUGGUACAGUUGUUUAUUCACAAGGAGAAACUCAAUGAAUAAGAUGGAAAAAAAAACUGACACAAAUUAGAGGAAGGACCUACCAAAAGAAGCAUCCGUUGUCCCAGGUAUAUCAGUAACAAUCCUGCGUAAAUGUUAAGAAAAAAAUGCUUCACCACCUGCGUGGAAGUGUCUGCGCCCUCAAAUGUUCAUCUUUGCACACCUUGUUUAUUUAGGUAAGCCCCAUUCAGCGUCCUCUUUUUCUGAUAAGGAAAAGAGAAUUUGAUGAGUUUAAUUGCUGUUAGAUUCUUUCCCCAAACUGUGAUACUACUUGGAUUACCAUUAUUAUCUGUUUAUUCUCUUCUUUGGAGGACUAUGGCAAAACACCAUGGAAGAGAAUAAAGGAAGGGAACGCAGUGCUGCCACCACUUCAAUGUGUAGGGGUGCUGUCUAGUGCUCAGAUGUCAUUUCAAUGUUUAAAGAUCAUAUGUUCUCCUUAAUUGAGCCAUUAAAAAAACUUUCUAUAUUUCCAUAAGUAGUGGAGCCAAGUACAGCUUUAUGCAUUCCUCUGUUCUGGUGUAAUGCCAUCAUGCCUACUUGACACUUUGAGCAACUAGCCAAGUAGAGGUAGUGGAGCCAAGUACAGCUUGUGACAUUUUCCGGUUCCAUUCUAAUGCCAUGAUAAUUGCUUGA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
15.85%
ME_num:
MEP:
69.51%
HE_num:
HEP:
14.43%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
callus
Tau :
0.75
Avg Expression:
11.57
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 1.06354028010725 | 0.000841488188286382 |
| 2 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | -2.23848499079996 | 0.0030537143324629 |
| 3 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -1.44130399899188 | 0.00234132780441581 |
| 4 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 2.21166689831464 | 1.38119582906944e-06 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -1.11210139849558 | 0.00700731997146235 |