Chr:
Chr7
Start:
13309302
End:
13311999
Strand:
-
Ref_name:
LOC9270156
Sequence
(XR_001547283.2):
AGAUUGCACCAGCCUGCACCAAACCCUAGCCUCGCUUCACCCGCAGCCGCGCAAGUGCGCCGCCUCGCCUCCUCCUCCCUCACGCGCGCCGGCCUGCUCCCUCAUCCUUCUCCUCCCCUCGCAUACGCCGUCAUCGCCGUUGUCGCCACCGCCGCCGCUGCCACGACGUCGCCGCCGCUGCCAUGACGUCACCGCCGCCGUCACUACCGCCGUCGUCGACGCCGCCGCCGCCACUGCGCUUUUCUAGCCGUCGUUGCCACAUCGGAAGAUCCAGCCACCCAAACGAGAGAUCCAAUGGAAUUGAAGUGAGAAGGGAACAAUAGAGGAACUAGGGGAAAAGAUGGGCAAAAGAUUGUGCUACUCUGAUGCAGUUUUCAGAGACUACAUUAUGUAUUUAUAUUCAGACCACAUUCCAAUUUAUGAGCAUAUUACAAUCAUGCAAUGUUUAUCUCAUCGACAAACUAUUGAAUGACCAUCAUUUUGGAAAAUGAACAAGACAUCUCACUUUCAGCAACUGCAGGUGCUUGCAUUUGAAUUAUAUUGAGGUAUCCAAACUUCCAGAGUAAUGUUCUAUUCUAUUUCAGCAAAAUGAUUUAGGCUUAAUUCAUCAUGAUGUCAAAUGUCAAGUAUAUGCUCUGUCCCACCUAUGAGAAAGCAACAACCUAUUUGACAAAGUGACAGUUAUAGUUUGUAGGUCUUCCAAUUUAUAUGUACAAGAUACAAAUGAAGAAUAUUCAUAAAUGAUUGUGCGAUAAGUUCAGACCCACAUGAAAGGCUCUGCAACAUGUGUUCAGCUUUGAUUUUUUUUUAAAGAGAUCCUAUGAGAAAUUCUAGAUGCGCUUCUUCAUUCUAUGAUGGGUUGUCUAUAUACUUCCUCCGUUUCACAAUAUGGUGAUAGGGAUCAGCAAGCGUGCAGUACAUCUCAAGCACAUGCAAGCUGGUGGUUGGAUCUUUACUGGCCAUAGCUACUACCCCUCCAUACUCGUAAAGGAAGUCGUUUAGGACAGCGACACGUUCUCCAAAACACAACUUUGACUUCUUAUUUCUAUAAAAAUAUUUAUUGAAAAGUUAUAUAUGUAUACUUUUAUGAAAAUAUUUUUCAAAACAAAUCUAUACAUAUAAUUUUUACAUUUUUAAACUCAACAACUUAAGAGUUAUUCAUGAUUUAUAUUCCCAAUGUUUGACUUAAAUAUUGUCCUAAACGACAUCCUUUAUGAAUAUGGUGUAGUAAUUCUUUUUUUAUGAAAAAAAUCCUCAAUCAAAUAAAUCUCAAAUAUCAGAUUAUAUCUGGUCAGUGUAACUAAUGUGUUAUCCUGACUCUGAAGUCAAUUUUGAAUAAUCUUGAAUUGGAUCAAUGCAAAGAUAUCUUCUAUUCUUUA
Sequence
(XR_003243601.1):
GAGAUUGCACCAGCCUGCACCAAACCCUAGCCUCGCUUCACCCGCAGCCGCGCAAGUGCGCCGCCUCGCCUCCUCCUCCCUCACGCGCGCCGGCCUGCUCCCUCAUCCUUCUCCUCCCCUCGCAUACGCCGUCAUCGCCGUUGUCGCCACCGCCGCCGCUGCCACGACGUCGCCGCCGCUGCCAUGACGUCACCGCCGCCGUCACUACCGCCGUCGUCGACGCCGCCGCCGCCACUGCGCUUUUCUAGCCGUCGUUGCCACAUCGGAAGAUCCAGCCACCCAAACGAGAGAUCCAAUGGAAUUGAAGUGAGAAGGGAACAAUAGAGGAACUAGGGGAAAAGAUGGGCAAAAGAUUGUGCUACUCUGAUGCAGUUUUCAGAGACUACAUUAUGUAUUUAUAUUCAGACCACAUUCCAAUUUAUGAGCAUAUUACAAUCAUGCAAUGUUUAUCUCAUCGACAAACUAUUGAAUGACCAUCAUUUUGGAAAAUGAACAAGACAUCUCACUUUCAGCAACUGCAGGUGCUUGCAUUUGAAUUAUAUUGAGGUAUCCAAACUUCCAGAGUAAUGUUCUAUUCUAUUUCAGCAAAAUGAUUUAGGCUUAAUUCAUCAUGAUGUCAAAUGUCAAGUAUAUGCUCUGUCCCACCUAUGAGAAAGCAACAACCUAUUUGACAAAGUGACAGUUAUAGUUUGUAGGUCUUCCAAUUUAUAUGUACAAGAUACAAAUGAAGAAUAUUCAUAAAUGAUUGUGCGAUAAGUUCAGACCCACAUGAAAGGCUCUGCAACAUGUGUUCAGCUUUGAUUUUUUUUUAAAGAGAUCCUAUGAGAAAUUCUAGAUGCGCUUCUUCAUUCUAUGAUGGGUUGUCUAUAUACUUCCUCCGUUUCACAAUAUGGAACAAAUUAUCUUCUUGCAAAACAAAACUCCUACUUUUGUUGAGAGGGGCAACCCACUGUCCUCAGCUCAUGAAAAAAAAUAAUGAAGCUAUCAGUUGAAGAACCAAGCACAGUAAGAUGAUAGAGGCUUAACCUGAGCAAUAAUUUCCUUCUCAAUAUGGAACGAUAGCCAUAUUUCAGUAGCUACAUGAUCUGUUGUUUUUCUACCACAUAUUAAGUUUUCACUAGGUCAAUUAUUAAAAUGCAGUUUAGUUCUUUGUGAUACAAAUGAAAGGUAUUUUAGUUAAGUUAUUUUGUUUUGUGCCAACGUAUGGAAACACCAUUUCUCCCUACUUUACAGCCAUACAUAUUUUAGUUUUUUGAGUUAGUCAUGCUUCCCUAACCAACUUCUCUAUAUAUUUUGUGGGCAUAUUUACCUUCUAUUGUAAAAACUGUCUAGACCAAUUCUCAUGGAUUGCUCUUAUUAUUCUCAUUGUAGAUGGUGAUAGGGAUCAGCAAGCGUGCAGUACAUCUCAAGCACAUGCAAGCUGGUGGUUGGAUCUUUACUGGCCAUAGCUACUACCCCUCCAUACUCGUAAAGGAAGUCGUUUAGGACAGCGACACGUUCUCCAAAACACAACUUUGACUUCUUAUUUCUAUAAAAAUAUUUAUUGAAAAGUUAUAUAUGUAUACUUUUAUGAAAAUAUUUUUCAAAACAAAUCUAUACAUAUAAUUUUUACAUUUUUAAACUCAACAACUUAAGAGUUAUUCAUGAUUUAUAUUCCCAAUGUUUGACUUAAAUAUUGUCCUAAACGACAUCCUUUAUGAAUAUGGUGUAGUAAUUCUUUUUUUAUGAAAAAAAUCCUCAAUCAAAUAAAUCUCAAAUAUCAGAUUAUAUCUGGUCAGUGUAACUAAUGUGUUAUCCUGACUCUGAAGUCAAUUUUGAAUAAUCUUGAAUUGGAUCAAUGCAAAGAUAUCUUCUAUUCUUUA
Sequence
(XR_003243602.1):
CAGAGAUUGCACCAGCCUGCACCAAACCCUAGCCUCGCUUCACCCGCAGCCGCGCAAGUGCGCCGCCUCGCCUCCUCCUCCCUCACGCGCGCCGGCCUGCUCCCUCAUCCUUCUCCUCCCCUCGCAUACGCCGUCAUCGCCGUUGUCGCCACCGCCGCCGCUGCCACGACGUCGCCGCCGCUGCCAUGACGUCACCGCCGCCGUCACUACCGCCGUCGUCGACGCCGCCGCCGCCACUGCGCUUUUCUAGCCGUCGUUGCCACAUCGGAAGAUCCAGCCACCCAAACGAGAGAUCCAAUGGAAUUGAAGUGAGAAGGGAACAAUAGAGGAACUAGGGGAAAAGAUGGGCAAAAGAUUGUGCUACUCUGAUGCAGUUUUCAGAGACUACAUUAUGUAUUUAUAUUCAGACCACAUUCCAAUUUAUGAGCAUAUUACAAUCAUGCAAUGUUUAUCUCAUCGACAAACUAUUGAAUGACCAUCAUUUUGGAAAAUGAACAAGACAUCUCACUUUCAGCAACUGCAGGUGCUUGCAUUUGAAUUAUAUUGAGGUAUCCAAACUUCCAGAGUAAUGUUCUAUUCUAUUUCAGCAAAAUGAUUUAGGCUUAAUUCAUCAUGAUGUCAAAUGUCAAGUAUAUGCUCUGUCCCACCUAUGAGAAAGCAACAACCUAUUUGACAAAGUGACAGUUAUAGUUUGUAGGUCUUCCAAUUUAUAUGUACAAGAUACAAAUGAAGAAUAUUCAUAAAUGAUUGUGCGAUAAGUUCAGACCCACAUGAAAGGCUCUGCAACAUGUGUUCAGCUUUGAUUUUUUUUUAAAGAGAUCCUAUGAGAAAUUCUAGAUGCGCUUCUUCAUUCUAUGAUGGGUUGUCUAUAUACUUCCUCCGUUUCACAAUAUGGAACAAAUUAUCUUCUUGCAAAACAAAACUCCUACUUUUGUUGAGAGGGGCAACCCACUGUCCUCAGCUCAUGAAAAAAAAUAAUGAAGCUAUCAGUUGAAGAACCAAGCACAAUGGUGAUAGGGAUCAGCAAGCGUGCAGUACAUCUCAAGCACAUGCAAGCUGGUGGUUGGAUCUUUACUGGCCAUAGCUACUACCCCUCCAUACUCGUAAAGGAAGUCGUUUAGGACAGCGACACGUUCUCCAAAACACAACUUUGACUUCUUAUUUCUAUAAAAAUAUUUAUUGAAAAGUUAUAUAUGUAUACUUUUAUGAAAAUAUUUUUCAAAACAAAUCUAUACAUAUAAUUUUUACAUUUUUAAACUCAACAACUUAAGAGUUAUUCAUGAUUUAUAUUCCCAAUGUUUGACUUAAAUAUUGUCCUAAACGACAUCCUUUAUGAAUAUGGUGUAGUAAUUCUUUUUUUAUGAAAAAAAUCCUCAAUCAAAUAAAUCUCAAAUAUCAGAUUAUAUCUGGUCAGUGUAACUAAUGUGUUAUCCUGACUCUGAAGUCAAUUUUGAAUAAUCUUGAAUUGGAUCAAUGCAAAGAUAUCUUCUAUUCUUUA
Sequence
(XR_003243603.1):
GAGAUUGCACCAGCCUGCACCAAACCCUAGCCUCGCUUCACCCGCAGCCGCGCAAGUGCGCCGCCUCGCCUCCUCCUCCCUCACGCGCGCCGGCCUGCUCCCUCAUCCUUCUCCUCCCCUCGCAUACGCCGUCAUCGCCGUUGUCGCCACCGCCGCCGCUGCCACGACGUCGCCGCCGCUGCCAUGACGUCACCGCCGCCGUCACUACCGCCGUCGUCGACGCCGCCGCCGCCACUGCGCUUUUCUAGCCGUCGUUGCCACAUCGGAAGAUCCAGCCACCCAAACGAGAGAUCCAAUGGAAUUGAAGUGAGAAGGGAACAAUAGAGGAACUAGGGGAAAAGAUGGGCAAAAGAUUGUGCUACUCUGAUGCAGUUUUCAGAGACUACAUUAUGUAUUUAUAUUCAGACCACAUUCCAAUUUAUGAGCAUAUUACAAUCAUGCAAUGUUUAUCUCAUCGACAAACUAUUGAAUGACCAUCAUUUUGGAAAAUGAACAAGACAUCUCACUUUCAGCAACUGCAGGUGCUUGCAUUUGAAUUAUAUUGAGUUUGUAGGUCUUCCAAUUUAUAUGUACAAGAUACAAAUGAAGAAUAUUCAUAAAUGAUUGUGCGAUAAGUUCAGACCCACAUGAAAGGCUCUGCAACAUGUGUUCAGCUUUGAUUUUUUUUUAAAGAGAUCCUAUGAGAAAUUCUAGAUGCGCUUCUUCAUUCUAUGAUGGGUUGUCUAUAUACUUCCUCCGUUUCACAAUAUGGAACAAAUUAUCUUCUUGCAAAACAAAACUCCUACUUUUGUUGAGAGGGGCAACCCACUGUCCUCAGCUCAUGAAAAAAAAUAAUGAAGCUAUCAGUUGAAGAACCAAGCACAGUAAGAUGAUAGAGGCUUAACCUGAGCAAUAAUUUCCUUCUCAAUAUGGAACGAUAGCCAUAUUUCAGUAGCUACAUGAUCUGUUGUUUUUCUACCACAUAUUAAGUUUUCACUAGGUCAAUUAUUAAAAUGCAGUUUAGUUCUUUGUGAUACAAAUGAAAGGUAUUUUAGUUAAGUUAUUUUGUUUUGUGCCAACGUAUGGAAACACCAUUUCUCCCUACUUUACAGCCAUACAUAUUUUAGUUUUUUGAGUUAGUCAUGCUUCCCUAACCAACUUCUCUAUAUAUUUUGUGGGCAUAUUUACCUUCUAUUGUAAAAACUGUCUAGACCAAUUCUCAUGGAUUGCUCUUAUUAUUCUCAUUGUAGAUGGUGAUAGGGAUCAGCAAGCGUGCAGUACAUCUCAAGCACAUGCAAGCUGGUGGUUGGAUCUUUACUGGCCAUAGCUACUACCCCUCCAUACUCGUAAAGGAAGUCGUUUAGGACAGCGACACGUUCUCCAAAACACAACUUUGACUUCUUAUUUCUAUAAAAAUAUUUAUUGAAAAGUUAUAUAUGUAUACUUUUAUGAAAAUAUUUUUCAAAACAAAUCUAUACAUAUAAUUUUUACAUUUUUAAACUCAACAACUUAAGAGUUAUUCAUGAUUUAUAUUCCCAAUGUUUGACUUAAAUAUUGUCCUAAACGACAUCCUUUAUGAAUAUGGUGUAGUAAUUCUUUUUUUAUGAAAAAAAUCCUCAAUCAAAUAAAUCUCAAAUAUCAGAUUAUAUCUGGUCAGUGUAACUAAUGUGUUAUCCUGACUCUGAAGUCAAUUUUGAAUAAUCUUGAAUUGGAUCAAUGCAAAGAUAUCUUCUAUUCUUUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
32.11%
ME_num:
MEP:
46.75%
HE_num:
HEP:
20.93%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.68
Avg Expression:
9.56
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 2.0284988459876 | 7.14395602456225e-10 |
| 2 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -1.05922049638982 | 1.94929343958731e-05 |
| 3 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 2.16802667279227 | 2.99104365978136e-07 |
| 4 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 1.17266283528965 | 8.02051272542491e-05 |