Chr:
Chr8
Start:
18458521
End:
18462320
Strand:
-
Ref_name:
LOC9270059
Sequence
(XR_001548254.2):
AUUUUUUCCGGUCCGGAAAAAAUCCGAUCCCGUUCCGGUCGCAGCCAUCGCCUAUCGCGGCGCCGCAUCGCUUCUCCACCGUUGCAGCCUGCCACCCGUCGUGGCAGAUCUCGUCGUCGUCCGUCGCGGCUACUCCUGAGUCCUGUAGCCACGCGCCAUCCUCGCUGCCGGGGAAGACCGUCGGGGCGUCCAAUCCGCCGUCGACUGCUGGCCACCGCGUCGAUCUACUCCGUCCCGGCCUCGCCUUCUCCGUCGCGGCAGCGGCAUCGCUGCCCAUCGCGGCUGCUGCCCAUCCAUCCCGCACUUGCCGUCCAUCACAGCCGUCGUGAGUCCACAGCUUGCGUGUUGCAGCUCCAUCCUCACUGCUCACCGUGCUGCAGCCUCUGCUCCACUCUGCUACAGUGCUACUGGUGUUUUCCUGCGGCUGGAUAAUGUACUAGAGUAAGCCAUUUGGAAAGAACUUGGACUCUGCACAAGAAGAAUUCAGCGCCCAACUUGGGGAGUUAUUUCAGGAAAACCAACUCUACUGAUUUGGUCAGUACUUAGGAAAAGAGUUGGUCCACAACCUGAACGCUGUCAUGUUAUACUGGUAUAAUUUAUCAUUUUCUGAAUGGACUAACUGAUGAAGAAACUAAACUACUGGUGAGCACCUUAAUUCCAUCUUGCCAUCGUAGACGGAGUAUAUUAUCUGCACCUAAUUCUGUAUAUAGGGUAUAUAUAUCGUUCCUCAGUUUGACCGAUAGUCAAGUAUCCUCCCAUCCACUAAAGGUAAACACAAUUUCUCUUAUGGUCUCGGAGAAUGCAAGAUAUGGUAUUUCGGGAUUCGAUUUUGAUGCUAUACAGGAACAAUUGCACGUUUUCUCUUGCUGGUGUCCACUUAUCUAUCUGUGUUCAUCCCAUUUUACCUAAAAUGAUUUGCCGUAUUAGUCUGAAGAAUCAGUAGGGAAAUAAGUACAUGCCUGAAGGGCCUCAUAUUCCUGAAACCAAGAGUGCUGCCGUGUCUCUUUGGUUUAAUUAAAUCCUGCCUAUAUCCAAUAGGCCUAAUGGUACUGCUUUUAUGUAGGAUUUGAAGAUUUUACAUUCUGUGUUAGCUCAAUGUGGGUCCAAUUUAUAUGUUUAACUUUUUAGGAUAGGAUUUUAUAUACCUCAAUGUUUCCUUGAUUAUAUAUCUGAAUAUAAUCUGAAUAGUUCUGUAAGGAGGAAAUUUGAUGUUUUGAUAAGUUGAAGGAAAAGUUUCUAUAUCUACGCUCUGAAAUUUAGCGUAUAUGGAGUAUAUUUAGUCAAAUUUAUGCACCUUAAUUUAGCACCUAAAAUCAAGAUCAUCUUACUUGGUAGUCUGGUACAUUAUACAAGAUUGCUGCAUAAUUUUUUUAAUGAAUGCCUGCAGAAAGCAAAUGGUGUUGUUUCAGAUUUCAGAAUGUAAAUUGCCAUAGAUGGAAACACAUGAUAAGACGCUUUAAGUUAUAAGUUACAAUAGCUAAGAUUCUGAAAGUCUGAACUUUGGAAUAUUCAUUGAGAAAAGGUAGCCCUAAAAGUCUGAAUUUGGCUAAAAAGUCUGAAAGUGUGAAAUUCGGAACAUGAAAUGGCUAAUAUUCUGAAAGGCUGAACAUUGGGAUAAUUUUGCAUUACAGGUUAUGAUAAUGGGAUGGAUCAGAUGAAAACAUAACUACAUUAAAUAAUUUUUCAUGAUGAAACUAUAUAUAUAUGUAUAUAUCAACUUUUAGAUCCUUUUUGUAUAUAAAUGUGAAUACUACAUUGAAUUGUUAUGAUUUUAUUGUACCAAACUUCUAUCUCCUAACCACACUAUGUUCUUUCCGUUCACAUAAAUAAGUGGUCAAGCAUAGUCGUGUUUCUUAAGAUAUCCCUUCUGACUUUUCAAAUUGGACACUUUGAUUCGUAGUGUAUCUUUGUAGCUCUGCCACAAGUAAUUUUGCUACUCAACAAAAUACUCUCUCCGUUUUUUAAUAGAUGACGCCGUUGACUUUUUCUCACAUGUUUGACCAUUCGUCUUAUUCAAAAAAUUUAUGCAAAUGUAUAAGAUAUAAAUCACACAUAAAGUACUAUGAGUGAUAAAACAACUCAUAACAAAAUAAAUUAUAAUUACGUAAAUUUUUUGAAUAAGACGAAUGGUCAAACGUGUGAGAAAAAGUCAACAGCGUCAUCUAUUAAAAAACGGAGGUAGUAGCUUGGUAAGAACUGAAGGGUUGGUUGUACAACACAUGCCAGUUGAUUGACAAGAAGAAUCAAUUCUGUAUAAUAUAUCACUUUCACAUUUCUGGUUUGCAACUGAAUCCCAACAUUUAAGGGUGGAGUUGAUAUGGUUUUGGUUUGGCAUGUAUUGUUAUAGGUUAAUGGGAUGUAUAAUGUUGUCUUUGGUGUUGACGAGUUCAAUUUAUGUAUCAUGUUUCCAUAUUUACAGUAUGAAAUCACAACAUUAUGAAUGGAAUGCAUCUCAAGUUUGUUUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
29.67%
ME_num:
MEP:
57.52%
HE_num:
HEP:
12.6%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
callus
Tau :
0.62
Avg Expression:
4.78
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 1.03532111731412 | 6.04243396601279e-05 |
| 2 | Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 1.4078574860575 | 0.0102593156387103 |
| 3 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 2.59438728536501 | 3.50354467344311e-12 |
| 4 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -1.04722734166565 | 1.25161509984359e-05 |
| 5 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 3.09757024926086 | 5.98719892309859e-17 |