Chr:
Chr9
Start:
9544291
End:
9547497
Strand:
+
Ref_name:
LOC9270003
Sequence
(XR_001539951.2):
CCUAAUCCCCAUUUUCAUUUCUCCUCUUCUCUCUGAUCUCUCCCCCGAUCUAAUCUCCCGGCGAGCGAGCGAGUGGAAUCGGCGGCGAUCUUGGCGGUGACGGCGUUCCGGCGAGGUGGAGCACGCGUGCGACGACGAGCACCGAGCGGCUUCCAUUUGCGCCGGCUGGGGGGAGCACGCACGAGGGCGGCGGCAAGCCGUGCCGGGUGUCGGCGGUCCGGCGAGGCGGGCGCACAAGCGGCGGCGAGCACCGAUGCGGCCCGGACCUCGUCGGCGGGGGGGCGGAGCCCGAAGGCAGCCGCCAAGCCGACGCUUCCCGUCCCCGGCGAGGGAAAGUGAGGAGGUGAAGUGGCGGCGAUGCCGCUUCCCGGAGAAAUUCCGGUGGGUUUAGAGGCUUCGAAAUCCGGCGUUGAACACCGGCGGCCACGGCAGCUCAUACGGGAACGCGACGCCGGCGUGCGCGUUCCGCUGGUGCUCCCGUUCCACCGCCAUGGUCCGGAGCCACGCUUCCUCCGACGGCGACAGACAGCAUGAGGUACCCCCUUUCCGCCCCCGACGAUUACGCCAGCGAUGCCGCAGCCGAAGUACACAUCUCCUUGCGGCCCGGCAGCCCGCGGGUGGCCACGGACAAAUUCAGGGUGUUCUUGACUGAGCAGUGAGCACCCAGUCGCCGUUGCUGGGUAGCCAGGAAAAUACUCUCAGGUGGUCGUCGUUGCUCACGCCGAUGAUACGGAGCUCGCCGCCGCCAUCGUCGUCACCGGCGACGACCCUGAACUUGCACUUGCGGGACCACUCCCUCAUGUGGUCUGGGAAUACGACGAUGGAGAACCUCGCCGUGAGCUCGUCAAGGGCUAGGCGGCUAGGAAGGCACCGAGGCUGCCGCGGCGUCUCAUCUCCGACGUGGGGACGGCGACCAUCUGGUAGCGCCGCGUAAGUGGCUCGCAGACGAUGAGGCCAUCAGGGCAGCAGCGGCUGUCGGAGUCUCGGCGAUCGUCCAGGAGGCGGUGUCCGGGACGAAGUCGAGUGAGAGGCGGCAGCCGUAGACGAGAACCGGCCUGGAGACGUGGACGAACGCCGCAUGGGAGACCGCGCCGCCAACGGCGUGGUAUUGGCCGACGAGGUCGGGCCCGUGGUGGACACGGAAGCGGCGGAGGAAGACACUGCACCGUCGGCGGCAUCAACGACGACGACGCGGCGCUAGCGCUUGCAGACGGACGCGGCGCGGAUGAGGCAGGCGGCGGAUCGGAGUGGAGGCGCAGCAGGACGAGCUCGAGGACUUUGUCGGAGAUGUCGUCGACCACCCACGUAGCCACGUAGGCCUCGCCGUCGCCGGCAGCAACAAGACGGUCUUCUUCCUCCGCGCCGCCGUGCUCCGGUUCUUGCAAGUUGCGACGGCUCAUUCUCGGAUCCAUUAACCUUGAUCUUCUUCUCGCGUUUGUUUAUGGCUUGUUAUAGAGUAUACCAUAUCGUGCAUCAUGGUAGUAUUUUAUACUCACUCCGUUUCAGGUUAUAAGACUUUCUAGCAUUACCCACGUUCAUAUGAACUAGGAAGGUAGUCCGCGCAUUCGCGUGGGCAUAUAUUUUAAGAUGUGUUUGAGAUAUUUACAGUUAUAAGGAUGGAAUAUUAACUGUAGAACACCUCUCAUGCUUCAAAAAACAAAUCUCCGUAUAAUUUUUCUGUCAGCAUAGCGUAUAAUUUUUCCAACCUAGCUUUAUACCAUACACUAUUUGGUUAAUCCCAAUAAGUAAUUAUCAAUAGUCUUUAUCAUAUAAAAUAAGAAGGAAAAAUUAGUUUGUUUUAAAAAAAUAUAUCUAACAAAUUAAGUGUAAAUUGAAAAUAAGGUGUUUUUGUCUUUAAAUUGAAUGUUAGUGGACAUUUUUCUAACAAAUCUUAAAAAACUUUUAUCGCUAACAAAUGUUUUUUAUUGUACCAUCAAGUUAGACCUCCUUUUGUUUGUUGUAUAUUGAUGCAAUUUGUUGCAUACUUACAUAUGAAUCAAUAAACAUAGAGGAGAUAUACAUAUCCUAGUCCUCGCUUCCCUACGAUACGUGUGAUCUAUGGUGCUAUUUUUUUUAAAAAAAAUAGCUAAUCAACAUGAAUCUUAAAAUUGAAAUCUAAUAGUAAGAAAUAUAACUUUUAAACCAACUAUAUACUGCUACCUUAGUUGCUACCUUAGUGUAACUUAUAUAUGCAAUAAUUUUUGGAGGAAUUCAUAAUUCCAUGGCGUACCAUAGAGAAAAAUCCAUUAACAUCUAUGCACUUAAAAAAAGAUGCAAUGGUUAAAUAUAAUUUCGCAUGCAUUUUUAUUUUUGAAGUGUGGUGUAUUAUGAAUGCGCGCUUGAAUAUCUAUCCAUGGUAUAUUAAAAGUGCAUUAAAUACUAUCUAAGGUUGAUUACAUGGUAAUAUAAUAUAGUUUAGAGCACUUACACAAAAGAUUAUUUGUGUUGCUCAGCUUAUUUGAGCAUACUAAUUUCAAUAAAAUUAUGAAGGUACUGUAUUUUUAUCCCGUGGUUUAUACGAUUUAUAUAUGAGUUAGCUUUUUUUUUUUUAUUUAGCUAUGCAUGUUUGCAAAACAAUGUAUGCUAGUGCAACAUGUUUUAAUUGUAAUUCAGUUGACAUGUAAAAGACUAAUGGCGUGUGUUCCUUCGAAUUUUUUAUUCAAUGGCUUGCACUAUUUAUAUGUAAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
0.41%
ME_num:
MEP:
7.11%
HE_num:
HEP:
92.28%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.56
Avg Expression:
23.08
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -1.32502739455864 | 1.48061229371797e-17 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -1.66689569370455 | 7.06761735320967e-16 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -1.47527229318044 | 8.99628215857581e-16 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -2.2354972518901 | 8.50141721782812e-31 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -1.96537982641572 | 1.33835726778208e-36 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -1.2269994904917 | 8.90006809120579e-10 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -1.5957988200334 | 5.77144748365291e-30 |