Chr:
Chr10
Start:
8035126
End:
8038123
Strand:
-
Ref_name:
LOC9269970
Sequence
(XR_001540211.2):
CCCUAGCUGAUCCCAAGUCCCAAAUCCAUCGAAACCAGCCGCCACCGUCCCCUUCGGAGAGAAAAUAUCACCGUGUGCCGCGGCUGCCGCUCGCCUCCGCCUCCGCCGCUGGAGCGUGGCUGGGGUGCUGCGUCGGCGGCGGCGGCAGGGCCGGGUCGGCGGCGUGGUGCCACGCGACGGCGGCCGGCAGCAUGGCAGCGGCGUUGGAGCUGGAGGCUAUCCGGUGGGGGACCGCCAAGCUGCAGGGCGCGGGCAAGCGGCACCCACCCCUUCCUCUCGCGCGCCCAUCGAGCGCGGAAGCGGCGAGCUGUCGAGGCACCGGCGUCACUGCCGGCCAAGUCGCGCCGCGCCGCACCUCCUCCCAGCCGUCUAGCGACCUCAAGAAAUGCUCCAUGGUCUGAAUUCAUAGGUUCUGAGGUGAUGGUGAGAGCAGAUGAGAAUGGUGAAGACAUGUGCUGGCUUAGAUUGCUGCUUUCAUUGCUGAACCUGUGAUGGGUGCUGGCGGUGUUAUCGCUCCUCCAAAGACAUACUUUGAGAAGAGGUAAGGUUUGUCAAUCCUCCUCAUGUCGCCUUGAUGAUUCAUGAUGAGACGGCAGUGGAUUUUGGUUAGUGUGAUUUCGACACUUGGUUUUGCGUUUGGUAAGUGAACCUGAGAUUGUAUUUGGACUUGGUUGGGUUGGCGCAUAUGUAUUUUGACUUGUGAUUAUGUGUUAAAGUCAAUAACUGGCUGGUUUUGGUCAGAGUGAUAUACUGAUGUACUGAACCUGAUUAUGUGCCGAUGUAUUUUGUUUUGGCUAGUUAACCUAUAAUGUAUUCAUGGUCAGUGAACCUGUGAUUGUAUUUGAACAUGUGGCUGGGUUGGCCCAUAUAUAUUUGCACUGUAUUAGAAGAUCAUUGGAUUUUAUUGGCUAUUAUAAGGGCUGUAAUUUUUGUGCUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
6.3%
ME_num:
0
MEP:
0.0%
HE_num:
460
HEP:
93.5%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot_apical_meristem
Tau :
0.61
Avg Expression:
181.28
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -1.65778580387627 | 2.33619947756313e-27 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -2.44393193620915 | 2.60865409307224e-76 |
| 3 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | 1.35073124052728 | 0.00366197337466324 |
| 4 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // Paclobutrazol (PB) | -1.81686487890279 | 2.78054385449267e-24 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -1.91057558513374 | 1.29413528676533e-76 |
| 6 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 1.35651570661792 | 1.886961974317e-125 |
| 7 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 1.89561813739937 | 5.49565454243058e-13 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -1.14212757023815 | 1.17869822137838e-37 |