Chr:
Chr7
Start:
20879121
End:
20881108
Strand:
+
Ref_name:
LOC9269953
Sequence
(XR_001547388.2):
GACGGUUUAUGAGACGUUUUAAAUAACGCCCUAGUUUUACAUUGAUUUCUCAAAAAUUAAGAUUUACAUUGAAUUUUUUUUUCUCCUGGAAACCACCCACGUCCUCAUCCUCUCUGCGUGCUGCAACAAACUCCCAUCUAGAUUGAACUGCCUGCUUGGUGCCGCCGCCUAUCUUCCACCGGUCGCCAUCUCGAUGCCUGCCGCCGGCUCGUCCUCGACCGGGGGCCAGCGGCGCCUCAUCCUCGGCGAGUCAAUGCCACAUCUGCCUCCUCCUCCUCAGGCCGCCGCCCACCACUGCCUGCUCUGAUCCUCGCCAUAGGAGCCACCGCUGGCAGUUUGCCGCCUUAUCAGCGACUCCCCGUCGCCAACGCGUCCCUCCCUCAGUUGCCUUCACCAGCCCAGCGACAACUCCACGGUGGUAGCUUGGUAGGUAUGCUCUCUCAUCCCCUAAUCUGUAAGGCUUAAGGAACUACAAAGGUGCUUUGAUUUGUUUGUGUGAUUCAAUUUGUCCAGACUUUAUGUUGAGUUCUACCCCAUCGGAUUAUUUCGUAAUCCUGCAGAAGUAUAAAAGAGUAAAUAUUGAUCUGUACCUUUCGUUCUUUCUGCUUCAGGGAUGAACCAUCGUACUAGUUGUUUGACGAAAUGCUAAUACCAAUACUUGCAUGAUGCAGAUCUGAUAAUCAAUUUGAUGAUUUGUGAACCUCUGUGGAUCAAUCAAUACCAAUAUGUCGAUCAUUAAGGGCUCAUUAUAAAUUCUUUUUUGCUACUGAUUCCAUUCCAUUUGAUGACUACAUUUGGAAUUUUAGCUUCAAGAAGGCACAAAAAUACAGAUGAGUAUUGUUGAAGUUCUGAAUGAUGCGAUGGUUCUUCAUACUGUCCUUCGGUGGCAUAUGAGUAAAGGAAUAGAGAUGCUGGUCCAAAAUGGGAGAUUUGCUUUCUAUAUGCUGAAGUUUCCAAAGUAUUUACAUGCAGGAGGGAGAGCAACUGCUAAAGUGUCAAAGAAGAUACUGAAGAUUGUAAAGGAUUGCUACAUCAUGCUGUGAAGGAGGAGGAGAUAAAGCAAGAAUUAUCUUAAGAACAGUUAUAGAUAUAUUUUAUCAUGCUGUGAAGAAGGGAGGAGAUAAAACAAGAAUUAUCUUAGGAAGAGUUAUAAAUUUAUUUUUCUAAGAGAUGACGCAAAUCUCUUUUUUCUGUAUGGCUGUUUAGCUGACUUGUGAAUCACAAUUGUCCUUAAUAUAAUUACCUUUCAUCUA
Sequence
(XR_003243318.1):
GACGGUUUAUGAGACGUUUUAAAUAACGCCCUAGUUUUACAUUGAUUUCUCAAAAAUUAAGAUUUACAUUGAAUUUUUUUUUCUCCUGGAAACCACCCACGUCCUCAUCCUCUCUGCGUGCUGCAACAAACUCCCAUCUAGAUUGAACUGCCUGCUUGGUGCCGCCGCCUAUCUUCCACCGGUCGCCAUCUCGAUGCCUGCCGCCGGCUCGUCCUCGACCGGGGGCCAGCGGCGCCUCAUCCUCGGCGAGUCAAUGCCACAUCUGCCUCCUCCUCCUCAGGCCGCCGCCCACCACUGCCUGCUCUGAUCCUCGCCAUAGGAGCCACCGCUGGCAGUUUGCCGCCUUAUCAGCGACUCCCCGUCGCCAACGCGUCCCUCCCUCAGUUGCCUUCACCAGCCCAGCGACAACUCCACGGUGGUAGCUUGGUAGGUAUGCUCUCUCAUCCCCUAAUCUGUAAGGCUUAAGGAACUACAAAGGUGCUUUGAUUUGUUUGUGUGAUUCAAUUUGUCCAGACUUUAUGUUGAGUUCUACCCCAUCGGAUUAUUUCGUAAUCCUGCAGAAGUAUAAAAGAGUAAAUAUUGAUCUGUACCUUUCGUUCUUUCUGCUUCAGGGAUGAACCAUCGUACUAGUUGUUUGACGAAAUGCUAAUACCAAUACUUGCAUGAUGCAGAUCUGAUAAUCAAUUUGAUGAUUUGUGAACCUCUGUGGAUCAAUCAAUACCAAUAUGUCGAUCAUUAAGGGCUCAUUAUAAAUUCUUUUUUGCUACUGAUUCCAUUCCAUUUGAUGACUACAUUUGGAAUUUUAGCUUCAAGAAGGCACAAAAAUACAGAUGAGUAUUGUUGAAGUUCUGAAUGAUGCGAUGGUUCUUCAUACUGUCCUUCGGUGGCAUAUGAGUAAAGGAAUAGAGAUGCUGGUCCAAAAUGGGAGAUUUGCUUUCUAUAUGCUGAAGUUUCCAAAGUAUUUACAUGCAGGAGGGAGAGCAACUGCUAAAGUGUCAAAGAUACUGAAGAUUGUAAAGGAUUGCUACAUCAUGCUGUGAAGGAGGAGGAGAUAAAGCAAGAAUUAUCUUAAGAACAGUUAUAGAUAUAUUUUAUCAUGCUGUGAAGAAGGGAGGAGAUAAAACAAGAAUUAUCUUAGGAAGAGUUAUAAAUUUAUUUUUCUAAGAGAUGACGCAAAUCUCUUUUUUCUGUAUGGCUGUUUAGCUGACUUGUGAAUCACAAUUGUCCUUAAUAUAAUUACCUUUCAUCUA
Sequence
(XR_003243319.1):
GACGGUUUAUGAGACGUUUUAAAUAACGCCCUAGUUUUACAUUGAUUUCUCAAAAAUUAAGAUUUACAUUGAAUUUUUUUUUCUCCUGGAAACCACCCACGUCCUCAUCCUCUCUGCGUGCUGCAACAAACUCCCAUCUAGAUUGAACUGCCUGCUUGGUGCCGCCGCCUAUCUUCCACCGGUCGCCAUCUCGAUGCCUGCCGCCGGCUCGUCCUCGACCGGGGGCCAGCGGCGCCUCAUCCUCGGCGAGUCAAUGCCACAUCUGCCUCCUCCUCCUCAGGCCGCCGCCCACCACUGCCUGCUCUGAUCCUCGCCAUAGGAGCCACCGCUGGCAGUUUGCCGCCUUAUCAGCGACUCCCCGUCGCCAACGCGUCCCUCCCUCAGUUGCCUUCACCAGCCCAGCGACAACUCCACGGUGGUAGCUUGGUAGGUAUGCUCUCUCAUCCCCUAAUCUGUAAGGCUUAAGGAACUACAAAGGUGCUUUGAUUUGUUUGUGUGAUUCAAUUUGUCCAGACUUUAUGUUGAGUUCUACCCCAUCGGAUUAUUUCGUAAUCCUGCAGAAGUAUAAAAGAAUCUGAUAAUCAAUUUGAUGAUUUGUGAACCUCUGUGGAUCAAUCAAUACCAAUAUGUCGAUCAUUAAGGGCUCAUUAUAAAUUCUUUUUUGCUACUGAUUCCAUUCCAUUUGAUGACUACAUUUGGAAUUUUAGCUUCAAGAAGGCACAAAAAUACAGAUGAGUAUUGUUGAAGUUCUGAAUGAUGCGAUGGUUCUUCAUACUGUCCUUCGGUGGCAUAUGAGUAAAGGAAUAGAGAUGCUGGUCCAAAAUGGGAGAUUUGCUUUCUAUAUGCUGAAGUUUCCAAAGUAUUUACAUGCAGGAGGGAGAGCAACUGCUAAAGUGUCAAAGAAGAUACUGAAGAUUGUAAAGGAUUGCUACAUCAUGCUGUGAAGGAGGAGGAGAUAAAGCAAGAAUUAUCUUAAGAACAGUUAUAGAUAUAUUUUAUCAUGCUGUGAAGAAGGGAGGAGAUAAAACAAGAAUUAUCUUAGGAAGAGUUAUAAAUUUAUUUUUCUAAGAGAUGACGCAAAUCUCUUUUUUCUGUAUGGCUGUUUAGCUGACUUGUGAAUCACAAUUGUCCUUAAUAUAAUUACCUUUCAUCUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
57.93%
ME_num:
MEP:
41.67%
HE_num:
HEP:
0.2%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot_apical_meristem
Tau :
0.83
Avg Expression:
3.29
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 1.1674618813534 | 0.0181664776155872 |