OSA-LNC9269953


Function Link


Basic Info

Chr:

Chr7

Start:

20879121

End:

20881108

Strand:

+

Ref_name:

LOC9269953

Sequence
(XR_001547388.2):

GACGGUUUAUGAGACGUUUUAAAUAACGCCCUAGUUUUACAUUGAUUUCUCAAAAAUUAAGAUUUACAUUGAAUUUUUUUUUCUCCUGGAAACCACCCACGUCCUCAUCCUCUCUGCGUGCUGCAACAAACUCCCAUCUAGAUUGAACUGCCUGCUUGGUGCCGCCGCCUAUCUUCCACCGGUCGCCAUCUCGAUGCCUGCCGCCGGCUCGUCCUCGACCGGGGGCCAGCGGCGCCUCAUCCUCGGCGAGUCAAUGCCACAUCUGCCUCCUCCUCCUCAGGCCGCCGCCCACCACUGCCUGCUCUGAUCCUCGCCAUAGGAGCCACCGCUGGCAGUUUGCCGCCUUAUCAGCGACUCCCCGUCGCCAACGCGUCCCUCCCUCAGUUGCCUUCACCAGCCCAGCGACAACUCCACGGUGGUAGCUUGGUAGGUAUGCUCUCUCAUCCCCUAAUCUGUAAGGCUUAAGGAACUACAAAGGUGCUUUGAUUUGUUUGUGUGAUUCAAUUUGUCCAGACUUUAUGUUGAGUUCUACCCCAUCGGAUUAUUUCGUAAUCCUGCAGAAGUAUAAAAGAGUAAAUAUUGAUCUGUACCUUUCGUUCUUUCUGCUUCAGGGAUGAACCAUCGUACUAGUUGUUUGACGAAAUGCUAAUACCAAUACUUGCAUGAUGCAGAUCUGAUAAUCAAUUUGAUGAUUUGUGAACCUCUGUGGAUCAAUCAAUACCAAUAUGUCGAUCAUUAAGGGCUCAUUAUAAAUUCUUUUUUGCUACUGAUUCCAUUCCAUUUGAUGACUACAUUUGGAAUUUUAGCUUCAAGAAGGCACAAAAAUACAGAUGAGUAUUGUUGAAGUUCUGAAUGAUGCGAUGGUUCUUCAUACUGUCCUUCGGUGGCAUAUGAGUAAAGGAAUAGAGAUGCUGGUCCAAAAUGGGAGAUUUGCUUUCUAUAUGCUGAAGUUUCCAAAGUAUUUACAUGCAGGAGGGAGAGCAACUGCUAAAGUGUCAAAGAAGAUACUGAAGAUUGUAAAGGAUUGCUACAUCAUGCUGUGAAGGAGGAGGAGAUAAAGCAAGAAUUAUCUUAAGAACAGUUAUAGAUAUAUUUUAUCAUGCUGUGAAGAAGGGAGGAGAUAAAACAAGAAUUAUCUUAGGAAGAGUUAUAAAUUUAUUUUUCUAAGAGAUGACGCAAAUCUCUUUUUUCUGUAUGGCUGUUUAGCUGACUUGUGAAUCACAAUUGUCCUUAAUAUAAUUACCUUUCAUCUA

Sequence
(XR_003243318.1):

GACGGUUUAUGAGACGUUUUAAAUAACGCCCUAGUUUUACAUUGAUUUCUCAAAAAUUAAGAUUUACAUUGAAUUUUUUUUUCUCCUGGAAACCACCCACGUCCUCAUCCUCUCUGCGUGCUGCAACAAACUCCCAUCUAGAUUGAACUGCCUGCUUGGUGCCGCCGCCUAUCUUCCACCGGUCGCCAUCUCGAUGCCUGCCGCCGGCUCGUCCUCGACCGGGGGCCAGCGGCGCCUCAUCCUCGGCGAGUCAAUGCCACAUCUGCCUCCUCCUCCUCAGGCCGCCGCCCACCACUGCCUGCUCUGAUCCUCGCCAUAGGAGCCACCGCUGGCAGUUUGCCGCCUUAUCAGCGACUCCCCGUCGCCAACGCGUCCCUCCCUCAGUUGCCUUCACCAGCCCAGCGACAACUCCACGGUGGUAGCUUGGUAGGUAUGCUCUCUCAUCCCCUAAUCUGUAAGGCUUAAGGAACUACAAAGGUGCUUUGAUUUGUUUGUGUGAUUCAAUUUGUCCAGACUUUAUGUUGAGUUCUACCCCAUCGGAUUAUUUCGUAAUCCUGCAGAAGUAUAAAAGAGUAAAUAUUGAUCUGUACCUUUCGUUCUUUCUGCUUCAGGGAUGAACCAUCGUACUAGUUGUUUGACGAAAUGCUAAUACCAAUACUUGCAUGAUGCAGAUCUGAUAAUCAAUUUGAUGAUUUGUGAACCUCUGUGGAUCAAUCAAUACCAAUAUGUCGAUCAUUAAGGGCUCAUUAUAAAUUCUUUUUUGCUACUGAUUCCAUUCCAUUUGAUGACUACAUUUGGAAUUUUAGCUUCAAGAAGGCACAAAAAUACAGAUGAGUAUUGUUGAAGUUCUGAAUGAUGCGAUGGUUCUUCAUACUGUCCUUCGGUGGCAUAUGAGUAAAGGAAUAGAGAUGCUGGUCCAAAAUGGGAGAUUUGCUUUCUAUAUGCUGAAGUUUCCAAAGUAUUUACAUGCAGGAGGGAGAGCAACUGCUAAAGUGUCAAAGAUACUGAAGAUUGUAAAGGAUUGCUACAUCAUGCUGUGAAGGAGGAGGAGAUAAAGCAAGAAUUAUCUUAAGAACAGUUAUAGAUAUAUUUUAUCAUGCUGUGAAGAAGGGAGGAGAUAAAACAAGAAUUAUCUUAGGAAGAGUUAUAAAUUUAUUUUUCUAAGAGAUGACGCAAAUCUCUUUUUUCUGUAUGGCUGUUUAGCUGACUUGUGAAUCACAAUUGUCCUUAAUAUAAUUACCUUUCAUCUA

Sequence
(XR_003243319.1):

GACGGUUUAUGAGACGUUUUAAAUAACGCCCUAGUUUUACAUUGAUUUCUCAAAAAUUAAGAUUUACAUUGAAUUUUUUUUUCUCCUGGAAACCACCCACGUCCUCAUCCUCUCUGCGUGCUGCAACAAACUCCCAUCUAGAUUGAACUGCCUGCUUGGUGCCGCCGCCUAUCUUCCACCGGUCGCCAUCUCGAUGCCUGCCGCCGGCUCGUCCUCGACCGGGGGCCAGCGGCGCCUCAUCCUCGGCGAGUCAAUGCCACAUCUGCCUCCUCCUCCUCAGGCCGCCGCCCACCACUGCCUGCUCUGAUCCUCGCCAUAGGAGCCACCGCUGGCAGUUUGCCGCCUUAUCAGCGACUCCCCGUCGCCAACGCGUCCCUCCCUCAGUUGCCUUCACCAGCCCAGCGACAACUCCACGGUGGUAGCUUGGUAGGUAUGCUCUCUCAUCCCCUAAUCUGUAAGGCUUAAGGAACUACAAAGGUGCUUUGAUUUGUUUGUGUGAUUCAAUUUGUCCAGACUUUAUGUUGAGUUCUACCCCAUCGGAUUAUUUCGUAAUCCUGCAGAAGUAUAAAAGAAUCUGAUAAUCAAUUUGAUGAUUUGUGAACCUCUGUGGAUCAAUCAAUACCAAUAUGUCGAUCAUUAAGGGCUCAUUAUAAAUUCUUUUUUGCUACUGAUUCCAUUCCAUUUGAUGACUACAUUUGGAAUUUUAGCUUCAAGAAGGCACAAAAAUACAGAUGAGUAUUGUUGAAGUUCUGAAUGAUGCGAUGGUUCUUCAUACUGUCCUUCGGUGGCAUAUGAGUAAAGGAAUAGAGAUGCUGGUCCAAAAUGGGAGAUUUGCUUUCUAUAUGCUGAAGUUUCCAAAGUAUUUACAUGCAGGAGGGAGAGCAACUGCUAAAGUGUCAAAGAAGAUACUGAAGAUUGUAAAGGAUUGCUACAUCAUGCUGUGAAGGAGGAGGAGAUAAAGCAAGAAUUAUCUUAAGAACAGUUAUAGAUAUAUUUUAUCAUGCUGUGAAGAAGGGAGGAGAUAAAACAAGAAUUAUCUUAGGAAGAGUUAUAAAUUUAUUUUUCUAAGAGAUGACGCAAAUCUCUUUUUUCUGUAUGGCUGUUUAGCUGACUUGUGAAUCACAAUUGUCCUUAAUAUAAUUACCUUUCAUCUA


Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

285

LEP:

57.93%

ME_num:

205

MEP:

41.67%

HE_num:

1

HEP:

0.2%

Type:

HCR (High-Capacity ncRNA)


Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

shoot_apical_meristem

Tau :

0.83

Avg Expression:

3.29

Tip: OSA-LNC9269953 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Nipponbare // panicle // AM--/--Nipponbare // panicle // PM1.16746188135340.0181664776155872