Chr:
Chr6
Start:
22556187
End:
22558790
Strand:
+
Ref_name:
LOC9269935
Sequence
(XR_001546348.2):
GAGCUGCACCGCGCGUAGGCGGCGCAUCCACGAGGCGCGCAAGAGCUAAGCUAAUAAUGCGGAAUAGCGAUGGAUAGCUUCAAUAGCUUGGAGCCUUGGAUCUCCAUAUAUAUGCUCGUAGUAGCGCCAUCACGGCCUUUUCUCUCUUCCUUCUCCUGCGGUAUAUGUGCUGCAUAUGUGCAAAAGCCUAUGACUACUAGCUUGUUUGGAGUUUCUGUACCGAUUGAUCGAGUAACGUUUGCCCACGCACUCCGCGGGUGUUCGAUGUAUUCAACAAUAUUUUGAGCAUGUGUGGAGGCCGGACGCGCAUGUAUGUUCGUGGUGGUGUGAGUGUAGCAUGCGUAACGUGAAUAUAAGAGACUGUCCAAACAUACUCCCUCCGUCCCAAAAAAAAAAAAUCCAAUAUAGUAUUGGAUGGGACGUUUUCUAAUACAAUAAAUCUGUACAGGAGUAUGUCUAGAUUUAUUAUACUAUGAAACGUCUAAUUCAAUACUAGAUUGAGAUUAUUUUUUGAGACGGAGGGAGUACUUUCGUUCGAGCUAUAUAUAUAUGGCCUAUGGCUAAUAAGUGUAAAAUCGAAAAGUAAAUCGAACAAGCAAAACAAAAUUAUAUGUACGUACAACUAUAUAUCUAUGUUAUUAAUCAGUUUAAAAGACCGAUGCUAAAAAAAUAUGCUAAAUAAAUGAACCCUAAAUUAACCCUAUAACUAUGUUUUAAAAAACUAAAUUUUGACCGUGGCUGACUGUGACCCUGCCAACAUACAAUUGAUAGUCUCUCGGUUGCAUAAUUCGUAGUUACCAUAUUCCUUGCAUGUGGGUCUCGUGGUCUUGCGUAUGUGUGGUUAACUGCAUGCAUGUGAUCAAUAAAAAUUUGAGUAUUUUUACUAUGCAUUGGGUCCAGGUACCUAGGUACCUGCAAUCAGAGCCAUUCAUCGAGUGUGAUAUUCAAUUGUUGUCAAUCUUCGGUACUAUCAGGUACAAGAAUCCUCUUGGCGGUACCCCCUUCGUUGAACAAGCGGAAGUGCAAAACUGGGUUUAAAAUAGUUUUUUUUUUGUGCUGAUUCCGCACCUCAGGCUCUUCCCCAUCGCCGGUAAGCCGCUACUCUUGAUCCCCUUCCCUUAAGGCACCUCAUCUAUAUUUGUCUUGCAUGGCAGCGGUGCAAUCAACCUUGCUAGCCGAAUCCAAGCUACCGAGACACCUUCAACUCCCUCGCUACAAACUGCAGCCACGACGACGUGCUCAUCAGCGCGGCAGUAACCUCAGGAAACAUGGCUAAUGUUGGGUCGCCGGCUCGACUACUUCCCAGCCUUCUCCCACCUCCUUGGUGCUAGUACAUCUGAGGUAAUUGUUGGGUGACGCGACGACUUUGGGGGAACCUCCUAACCGCCCUCCCCAGUACCCUCCCAACGACACAGCUACUUCCUCCCUCCUCCCUGAUCAAAUCUCAAACGAACCGAGAUUAGCAACAGUUGCAAGUCCAGCUUCAUCUCAACCCACCAUCAGGAAUGAAGGCGAGGUCAAGAGCAGGUACAAGUCCAGCUUCAUCUUGCUAAGAAUCAUAAGAAGCGAAUCCUGGAGGUGGUGAUCAGGGACUUCUGCUAUGCCGCAGCAGCAGUCAGGUCGUGGUGCCAUCGGUAGCCUUCAACCCUAAAUACAAACCGUCGCCCGUGAAGGAUAGUACGAGACUAGGAGGUCGCGAGGGUCUUGUUUCCUUCUUUUUCCUAUUGUGUCCUUGCUUAUUCAACGGUUAGAUUUUGUUUGGUACCUUGCAGUACCAGUAUUUGGAGGUACCAUUUAAUGGACCAUAAAAACACUCCAAAAAAUUACAUGCAUCUUGUGUGUUACUAGGGAGAGGAGUUCCACUCUUCUCUCUCACCUUCUCUCCCUAACUCCCGAAGACUUGGAUAGAGUGGGGCUUUGUGUUGGUUGUAAGGGUCGGGUUUUGGCUGAUCUCGGCUAUAUUCUGUUGUUGGCCUAGCGGCGGUCGGUCACGCUUAGCGGCGGCUGGUCUGGUGAUAGCCUUCUCCUGGAUGUGUGUUGGUGCUGUCGGUGUAUGUGUGGUGGUAUACUUUUUCAUUUUCCUGGUUACGACCUUACAGGGUUAUAAUCUUGCAAUUUUUUCCUACUCUAUCAAUAGAACUUUGCACCGUCUAGUGCGAGUCGUUAAAAAAAAAUAAAUGGCUCAUUUGGUUGAACUUUAGAUUUUAAGAAACAGCUAGUGUAAAUCUAGCUUGUGAGAAGUUAGAGAAGCUAAGAAAAACUAGUCUCAGUUUAUUUUGUGUAUUCUUUAACCACAGUUUUUCUAAUUCUACGAUAAAUUAUGACUA
Sequence
(XR_001546349.2):
GCUGCACCGCGCGUAGGCGGCGCAUCCACGAGGCGCGCAAGAGCUAAGCUAAUAAUGCGGAAUAGCGAUGGAUAGCUUCAAUAGCUUGGAGCCUUGGAUCUCCAUAUAUAUGCUCGUAGUAGCGCCAUCACGGCCUUUUCUCUCUUCCUUCUCCUGCGGUAUAUGUGCUGCAUAUGUGCAAAAGCCUAUGACUACUAGCUUGUUUGGAGUUUCUGUACCGAUUGAUCGAGUAACGUUUGCCCACGCACUCCGCGGGUGUUCGAUGUAUUCAACAAUAUUUUGAGCAUGUGUGGAGGCCGGACGCGCAUGUAUGUUCGUGGUGGUGUGAGUGUAGCAUGCGUAACGUGAAUAUAAGAGACUGUCCAAACAUACUCCCUCCGUCCCAAAAAAAAAAAAUCCAAUAUAGUAUUGGAUGGGACGUUUUCUAAUACAAUAAAUCUGUACAGGAGUAUGUCUAGAUUUAUUAUACUAUGAAACGUCUAAUUCAAUACUAGAUUGAGAUUAUUUUUUGAGACGGAGGGAGUACUUUCGUUCGAGCUAUAUAUAUAUGGCCUAUGGCUAAUAAGUGUAAAAUCGAAAAGUAAAUCGAACAAGCAAAACAAAAUUAUAUGUACGUACAACUAUAUAUCUAUGUUAUUAAUCAGUUUAAAAGACCGAUGCUAAAAAAAUAUGCUAAAUAAAUGAACCCUAAAUUAACCCUAUAACUAUGUUUUAAAAAACUAAAUUUUGACCGUGGCUGACUGUGACCCUGCCAACAUACAAUUGAUAGUCUCUCGGUUGCAUAAUUCGUAGUUACCAUAUUCCUUGCAUGUGGGUCUCGUGGUCUUGCGUAUGUGUGGUUAACUGCAUGCAUGUGAUCAAUAAAAAUUUGAGUAUUUUUACUAUGCAUUGGGUCCAGGUACCUAGGUACCUGCAAUCAGAGCCAUUCAUCGAGUGUGAUAUUCAAUUGUUGUCAAUCUUCGGUACUAUCAGGUACAAGAAUCCUCUUGGCGGUACCCCCUUCGUUGAACAAGCGGAAGUGCAAAACUGGGUUUAAAAUAGUUUUUUUUUUGUGCUGAUUCCGCACCUCAGGCUCUUCCCCAUCGCCGCGGUGCAAUCAACCUUGCUAGCCGAAUCCAAGCUACCGAGACACCUUCAACUCCCUCGCUACAAACUGCAGCCACGACGACGUGCUCAUCAGCGCGGCAGUAACCUCAGGAAACAUGGCUAAUGUUGGGUCGCCGGCUCGACUACUUCCCAGCCUUCUCCCACCUCCUUGGUGCUAGUACAUCUGAGGUAAUUGUUGGGUGACGCGACGACUUUGGGGGAACCUCCUAACCGCCCUCCCCAGUACCCUCCCAACGACACAGCUACUUCCUCCCUCCUCCCUGAUCAAAUCUCAAACGAACCGAGAUUAGCAACAGUUGCAAGUCCAGCUUCAUCUCAACCCACCAUCAGGAAUGAAGGCGAGGUCAAGAGCAGGUACAAGUCCAGCUUCAUCUUGCUAAGAAUCAUAAGAAGCGAAUCCUGGAGGUGGUGAUCAGGGACUUCUGCUAUGCCGCAGCAGCAGUCAGGUCGUGGUGCCAUCGGUAGCCUUCAACCCUAAAUACAAACCGUCGCCCGUGAAGGAUAGUACGAGACUAGGAGGUCGCGAGGGUCUUGUUUCCUUCUUUUUCCUAUUGUGUCCUUGCUUAUUCAACGGUUAGAUUUUGUUUGGUACCUUGCAGUACCAGUAUUUGGAGGUACCAUUUAAUGGACCAUAAAAACACUCCAAAAAAUUACAUGCAUCUUGUGUGUUACUAGGGAGAGGAGUUCCACUCUUCUCUCUCACCUUCUCUCCCUAACUCCCGAAGACUUGGAUAGAGUGGGGCUUUGUGUUGGUUGUAAGGGUCGGGUUUUGGCUGAUCUCGGCUAUAUUCUGUUGUUGGCCUAGCGGCGGUCGGUCACGCUUAGCGGCGGCUGGUCUGGUGAUAGCCUUCUCCUGGAUGUGUGUUGGUGCUGUCGGUGUAUGUGUGGUGGUAUACUUUUUCAUUUUCCUGGUUACGACCUUACAGGGUUAUAAUCUUGCAAUUUUUUCCUACUCUAUCAAUAGAACUUUGCACCGUCUAGUGCGAGUCGUUAAAAAAAAAUAAAUGGCUCAUUUGGUUGAACUUUAGAUUUUAAGAAACAGCUAGUGUAAAUCUAGCUUGUGAGAAGUUAGAGAAGCUAAGAAAAACUAGUCUCAGUUUAUUUUGUGUAUUCUUUAACCACAGUUUUUCUAAUUCUACGAUAAAUUAUGACUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
51.42%
ME_num:
MEP:
10.57%
HE_num:
HEP:
37.8%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
flag_leaf
Tau :
0.93
Avg Expression:
242.57
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | -8.06889077830395 | 1.91705790784602e-06 |
| 2 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 2.5875222900578 | 9.60029274350798e-21 |
| 3 | Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.27062079173571 | 0.000494220801204981 |
| 4 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 2.74795849877395 | 2.01916804582722e-07 |
| 5 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 9h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 9h50 min" | -1.11966485445238 | 0.000388241219770119 |
| 6 | Nipponbare // root // "mock,1_day"--/--Nipponbare // root // "auxin(50CM_2,4_D),1_day" | 3.05164124862358 | 0.0431377994249083 |
| 7 | Nipponbare // root // "mock,14_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),14_days" | 1.79364687534245 | 2.63893023023149e-11 |
| 8 | Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days" | 2.38172726774908 | 4.27169394728396e-07 |
| 9 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | -8.90143294356865 | 3.27234484534316e-10 |
| 10 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | 4.13909726926647 | 2.84518351130917e-08 |
| 11 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 2.22722212130442 | 0 |
| 12 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 1.660314917929 | 0.0281453928368133 |