Chr:
Chr11
Start:
1027963
End:
1030905
Strand:
-
Ref_name:
LOC9269886
Sequence
(XR_001540969.2):
CUACUACUAAUUUAUUUCUUUAUAGGUCCACCCUGUCAGAUUUCCAUCAAUCUAGCUCUCUUGUGCCUGAAAAACAGAAACGAACUGAUUUUGCCGCGGGUUUGCUCCAAAAUUUUGUGUUCGUACGCUUCCUCCCUCAAUUUGCCGGGUUUUCUUCUCCACUCUCGGAAGCAGUUAUGGUCCUAACAGAGAACAAAACCCAUCUCAUCUCCUUGACUCCUUCCCUGUACAUACCGACCCAAUCUCUCCAGCCUUCGCAGCUUCUCCACAGCGGAUGGCGGGGCCCGCCGCGGCCGACGGCACAAUCCCUUGCAGCCCAGGCGACGUCGCCGGUGCGGCAGUGCCUCAGCCCUGGUCGCUCGUCCCCAGGGCAAGAUCACCCGCCUCAACGCGCUUCUCCACGCCGUCAUCGAGGUCAACUCCGACGCGCUCCAGCAGCCGGCGCGCGCCGACACCGCGAGCGCGCCUCUAGCCACCGCUACUGCGGGCCGCUCCAUGGCGUCCCCAUCCUCAAGGACAACAUCGUGACGCGGGACCGGCUGAAAACGACGGCCGGGUCGUUCGCGCUGCUCGGCUUCGUCGUCUGUCGUGACGCCAGCGUGACGGCCGGCCUCCGCGCCGCCGCUGCCACCAUCCUCGGCAAGGCAAACUCCUCCAAGUGGUCCAACUUCCGCCCCGUCCCGAACGGCUGGAGCCAAGACGCUGGUAACACCUAUCACCACCCUAAGCUGUCGUUUUUUUCUCCAGCAUCUCGUCUUGUAUGCAAUGUGUUUGUGAAAUUGUCCAUAAAGAGCCCCAUGUUGUCAACUGACGUGAUCCGGUCCAGCCGCGCGGCGCUGGCAUGAGUGCAUCAUCCGUGUUGAACGGGUGGUCCCUGGCGGCUUUGCCCGCGCGCAUCCCCUAUGUUUUCAGUUUCAGCACCAGCAGCAACCACCUCACCGUGAUGGAUUCACUGGCUGAAUUUGUUCCUGCCAAUCAACGACCGCUUAUCAUAGCAGCUCCAGUUAGCUACUCACACGAAGGUCAUUUGCAUCUACUAGAAGCUGCAGCAUGGACGUGAUAUAUAUAUUUGCAAGAUCUGGUGAGAACACUAUUUAAUAAUCCCAAACACCAUAUUAGUGCUGGCAGUGAUUGUCAUACUAUGUGCACACGAUCUAUUAGAAUUUGUUGAACCCAAGCUUUGGCUAUCUUGCUCAUGCCAUAAUUGUUUGGAAUGUCAGAUUACAUUAGGAGGUGAUGAAGUAAGUGUUCCAAACGUGCAAAUCCAUGUCAUCAUCCACCAGCACUGCCCCCUCACUAUUACCAUUCUCUACCAUAUGUACUAGUAAUUAUUAUAGUUAUACAGAUGAAGUAAGAUUUCAUGCUGGAACUUUCUUAGGAAUAAUAUGCAACUUGUGACCUGUUUUUGCUAGCAUUAUUGUUGUUUUGAAUGAAGAAUUGAUGGUUGCAAUUGGCCGAUUUCUGCUAACCAGUGAAUCAGUAAGGUAUGAAUGGAUGCAAAUUCUGCUAAACACAUAGCUAUUUUUAUUCAGGAUAGAGCUGCGAACUACGACAUGAAUAAUACUCAUAUGUACAUGAAUGUACAUGUUAAUACAUACAUUAGGAUAAAUAUAAUAAAUAACUAGAUGAAUGGGUAGUGUGAACUAACCUAGCAAGUUCUGUUUUUUAAAUCGUUUGGUGGAAAAUCUGGCAGUUUUUUUAUCAAAAGAUAUGUGAAAUGAUGUAGACACUCCCAGUCUUAUAUACAGUCCUCAUCAAGGUUGUUCAUGUUGCUUAGGAUUCUAUUCAUUCGUCCUUAUCUUUUUUUUUUGUUAGUAACAACAUCUUUGUACCAUGAUCUAAGCUUUCAGGCUGGUAUAAGUAUAAUCAGCCAUCUGUGGCCUUUCAAUUAUUCUAAUUAUGCAUGUGUACAAGAUUGUCCUUUUUUAUUCAAUUCAGUGAUCUCCAAGGUUGCAUGUAAGCUUUGUCCACUAGAUCAUGGAUCCAACACAAGCCUCCAGGUGCUGUUAACCUCAUCUCCACAUAUUUAGCGACAAACUUUGUGUGAGAUGAAGAUCAAAUUGUAUAGUCAAAUAUAUUCACUUGUGGUUAUUAAAUUUAUAACACACCUACAUUACCUUUACUUUCUAUUUCAACACAGCAAACUAUGGAUUUAAAUGCUAGUAAACAGACAUUGCUUUUCUACAGACCAUUUAUGAGCAUUUUUGGUAGAAUAAAGGAGUUUUCAUAUGUGGAAAAAAAUAUCUUGAAACUAAGAUCUGAUCCAAUGGCCAUUUAACAAUUGUGUGAAUUAGUGAUUAUUACAGCAGAAGUGUGUGAUCAUUGAGUAUGUUUAUUAAAAUUCUUUGAAGUGGUGGAAUUUUUUUACACUGCCACCACAUGUUUGUCACUGUUGUUGGUAUAGAAAGUACAAAUUUUCAUCUAUGUGAUAUCAACUGUUUAUUUUCAAGCCCAUUCUUUGGUUUGUCAAGGUGGGAAAUUCAAGUAAAGGCUUGUUUUGAUAACCUCUUUUGCAGGAUUUAUUUUCAAUUUGUUCAAGGCUGUUGGUAUUGCACGGAGGAAAUUCAUUACCUACUUUUUUUUUAACCUUGCAAUGUCAUAUUGAUAACCCAUGUAUCCCCGCAAAAAAAAUAUUGAUAACCCAUGUAAUCAUGUCAUCAACUCAUGUGAUAUUUGGAGUGCCUUGGAGUGUAUUGGCUUUGAAAGCUUUGCUAUCCUGUAUUUCCCAUGGUUAUUCAUCAACAGAGAUUGCACAUUGUUGCUUUCUACUC
Sequence
(XR_001540970.2):
UCCCUCAAUUUGCCGGGUUUUCUUCUCCACUCUCGGAAGCAGUUAUGGUCCUAACAGAGAACAAAACCCAUCUCAUCUCCUUGACUCCUUCCCUGUACAUACCGACCCAAUCUCUCCAGCCUUCGCAGCUUCUCCACAGCGGAUGGCGGGGCCCGCCGCGGCCGACGGCACAAUCCCUUGCAGCCCAGGCGACGUCGCCGGUGCGGCAGUGCCUCAGCCCUGGUCGCUCGUCCCCAGGGCAAGAUCACCCGCCUCAACGCGCUUCUCCACGCCGUCAUCGAGGUCAACUCCGACGCGCUCCAGCAGCCGGCGCGCGCCGACACCGCGAGCGCGCCUCUAGCCACCGCUACUGCGGGCCGCUCCAUGGCGUCCCCAUCCUCAAGGACAACAUCGUGACGCGGGACCGGCUGAAAACGACGGCCGGGUCGUUCGCGCUGCUCGGCUUCGUCGUCUGUCGUGACGCCAGCGUGACGGCCGGCCUCCGCGCCGCCGCUGCCACCAUCCUCGGCAAGGCAAACUCCUCCAAGUGGUCCAACUUCCGCCCCGUCCCGAACGGCUGGAGCCAAGACGCUGCCGCGCGGCGCUGGCAUGAGUGCAUCAUCCGUGUUGAACGGGUGGUCCCUGGCGGCUUUGCCCGCGCGCAUCCCCUAUGUUUUCAGUUUCAGCACCAGCAGCAACCACCUCACCGUGAUGGAUUCACUGGCUGAAUUUGUUCCUGCCAAUCAACGACCGCUUAUCAUAGCAGCUCCAGUUAGCUACUCACACGAAGGUCAUUUGCAUCUACUAGAAGCUGCAGCAUGGACGUGAUAUAUAUAUUUGCAAGAUCUGGUGAGAACACUAUUUAAUAAUCCCAAACACCAUAUUAGUGCUGGCAGUGAUUGUCAUACUAUGUGCACACGAUCUAUUAGAAUUUGUUGAACCCAAGCUUUGGCUAUCUUGCUCAUGCCAUAAUUGUUUGGAAUGUCAGAUUACAUUAGGAGGUGAUGAAGUAAGUGUUCCAAACGUGCAAAUCCAUGUCAUCAUCCACCAGCACUGCCCCCUCACUAUUACCAUUCUCUACCAUAUGUACUAGUAAUUAUUAUAGUUAUACAGAUGAAGUAAGAUUUCAUGCUGGAACUUUCUUAGGAAUAAUAUGCAACUUGUGACCUGUUUUUGCUAGCAUUAUUGUUGUUUUGAAUGAAGAAUUGAUGGUUGCAAUUGGCCGAUUUCUGCUAACCAGUGAAUCAGUAAGGUAUGAAUGGAUGCAAAUUCUGCUAAACACAUAGCUAUUUUUAUUCAGGAUAGAGCUGCGAACUACGACAUGAAUAAUACUCAUAUGUACAUGAAUGUACAUGUUAAUACAUACAUUAGGAUAAAUAUAAUAAAUAACUAGAUGAAUGGGUAGUGUGAACUAACCUAGCAAGUUCUGUUUUUUAAAUCGUUUGGUGGAAAAUCUGGCAGUUUUUUUAUCAAAAGAUAUGUGAAAUGAUGUAGACACUCCCAGUCUUAUAUACAGUCCUCAUCAAGGUUGUUCAUGUUGCUUAGGAUUCUAUUCAUUCGUCCUUAUCUUUUUUUUUUGUUAGUAACAACAUCUUUGUACCAUGAUCUAAGCUUUCAGGCUGGUAUAAGUAUAAUCAGCCAUCUGUGGCCUUUCAAUUAUUCUAAUUAUGCAUGUGUACAAGAUUGUCCUUUUUUAUUCAAUUCAGUGAUCUCCAAGGUUGCAUGUAAGCUUUGUCCACUAGAUCAUGGAUCCAACACAAGCCUCCAGGUGCUGUUAACCUCAUCUCCACAUAUUUAGCGACAAACUUUGUGUGAGAUGAAGAUCAAAUUGUAUAGUCAAAUAUAUUCACUUGUGGUUAUUAAAUUUAUAACACACCUACAUUACCUUUACUUUCUAUUUCAACACAGCAAACUAUGGAUUUAAAUGCUAGUAAACAGACAUUGCUUUUCUACAGACCAUUUAUGAGCAUUUUUGGUAGAAUAAAGGAGUUUUCAUAUGUGGAAAAAAAUAUCUUGAAACUAAGAUCUGAUCCAAUGGCCAUUUAACAAUUGUGUGAAUUAGUGAUUAUUACAGCAGAAGUGUGUGAUCAUUGAGUAUGUUUAUUAAAAUUCUUUGAAGUGGUGGAAUUUUUUUACACUGCCACCACAUGUUUGUCACUGUUGUUGGUAUAGAAAGUACAAAUUUUCAUCUAUGUGAUAUCAACUGUUUAUUUUCAAGCCCAUUCUUUGGUUUGUCAAGGUGGGAAAUUCAAGUAAAGGCUUGUUUUGAUAACCUCUUUUGCAGGAUUUAUUUUCAAUUUGUUCAAGGCUGUUGGUAUUGCACGGAGGAAAUUCAUUACCUACUUUUUUUUUAACCUUGCAAUGUCAUAUUGAUAACCCAUGUAUCCCCGCAAAAAAAAUAUUGAUAACCCAUGUAAUCAUGUCAUCAACUCAUGUGAUAUUUGGAGUGCCUUGGAGUGUAUUGGCUUUGAAAGCUUUGCUAUCCUGUAUUUCCCAUGGUUAUUCAUCAACAGAGAUUGCACAUUGUUGCUUUCUACUC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
0.81%
ME_num:
MEP:
55.69%
HE_num:
HEP:
43.29%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
callus
Tau :
0.58
Avg Expression:
8.48
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 1.2753137326958 | 2.76951635396499e-06 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 1.19530456721762 | 3.5881019141075e-06 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 1.64058162429047 | 3.22885454636801e-08 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 1.14857713729662 | 2.08846358345216e-06 |
| 5 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | -1.42189440076245 | 0.000555322656901946 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 1.03665524023229 | 0.000117802000376642 |
| 7 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | -1.34033276389169 | 0.000240564771509121 |
| 8 | BR-IRGA_409 // spikelet // control condition (29C) for 7 hrs--/--BR-IRGA_409 // spikelet // high temperature treatment (38C) for 7 hrs | 1.13001008012237 | 3.75790196161914e-08 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 1.22407122818424 | 3.54895151829211e-07 |
| 10 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | -1.18877509010629 | 0.000581010756477331 |
| 11 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | -1.1888695650339 | 0.000598540954235718 |
| 12 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | -1.18894910593412 | 0.000583972644758552 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 1.27536490960277 | 2.03189987321626e-06 |