Chr:
Chr10
Start:
545755
End:
549625
Strand:
-
Ref_name:
LOC9269858
Sequence
(XR_001540481.2):
GAUAAAAACUAGAAUAUGGGAAAACUAAGGUUAGAAUCUAUAAUGUUGGGAAUAAAAGAAAUCUAGGUUAGUUGUGAUAAUAUUAAUUCUUAAUUUUUGGGAUUCAAUAAAUCAUGAAAUUGGAAGUGUUAAAAUAUAGAUAAAUAUCUGAAAGAAAUAAGAAGAUUAAACCAUCUAAAAAUUAUUCACACAAAAAGUCUAGAAAAAGCCCUAAUUGUGAUUUUUCUCGGGUCGCUACUGUUCAUUGCGCGCCAGUUGUUCGAUCCGCGCCUAACCCGACCGAACACCCGACGCAGCCCUCUCCAAUCACUGCCAUGCCGCGCGUGUGCCUUCCGACCCGUGCGCCGCACUAGUCAUGCCCGUGCGCCGCACCGCGUCGCGCCACGCCGCGUGGGCCCGCCGCCGACCGAGCCGCCAAAAACCCGCGCCAAAGCUGCGCUGCCACGAGUGCCCGCGUCAUCCCGUCCCCUCGCACAUCGCCUUCGGGAUUGAGUGAUAACGGCCGCCACAACGACCCCGCGUCACCCUAGGGCAUAGCCCUGCGUCUUCCCUAUCGAGGCCGAUAUCACUGUCCGUCGCCGUCGCUCUUGUCGCCGUCGCGUCGCCAUCCUGUCGCCCACAACUGAGACCGCUGGAUAUUAGGGUGCUCCUUCCCUAGCUAAUGAUCCCUCUCCUGGAACCCUAUCAUCUAGGCAAUCAUGCCGGCACAGUGCAUUGAACUAAACCUAGGAGAGAUCGAAACGUGGCUGAGUCAUCGAUUGACCUUAUCCAGUAGGAAUCGCCCUCCCCUCGCUUGUAUAAACUCGUCCCUAGCUCGUUCUUAUCCUAACCCAACCUUCCAUUAGCUCUUUCCCUUCCUAAAACUCUUGCUCCUCCGAAAAGGAGCAAAACCGCGCCGCCCGCCGGGUGUCGAACACCUGGUGAGCGGGGGUUGCGCCGCCGCCGCAGGGCCUCUCGGCCGAUGUGGGUGGCGGGGUGUGGAGAGGAGGUGCUCGCACUGCUGUUACCGCCAUUGGAGGGAGCCGGGAGCCGUUGGACGAAGAGGGCCGGGCGUCGAACACCUUCAAGCCUCGCCGACCGCCGUCUGCCCCUAUUUCGGCCGCACCGCGCCGCACGCCGUCGAACUCCGCCGUUCCACCACUCCGUGAUUCCGAGGGAGUAGCUGAGUUGACUGAGGAGCAGGGACAGCAAGACUGUGAUCCAGUGGAUGGCAAUGAAGUCGAGGAGGAUCCCUAUGCUUAUCUUCAGGAGGAUGCGGAGGAUGACGGCGCCCCGUAGAUGUUAGUUACGGUCGUUGCCUGUGGCAAUGGCAAGGCCGCUGCUUAAAUUCCGCUGCCUUAUCUAUUUCUGCUUUUGCAUGUAUUCCAGACCGUUCGGGCCUAUGUUCUGGUCUAUGCAUGCGGGCCUAUGAUGUAAUAAUUCGCGCUAGACAAUCUUUGUAUGUGCACUUGAUAUUUCAGCAAUGUAAUCGUGAGUACCAGACUAUUUGAUCCAGGGAAAUGGUACUAUUAACACGAGUGAUUCCUGUUAUAAAAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
70.12%
ME_num:
MEP:
27.85%
HE_num:
HEP:
1.83%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
spikelet
Tau :
0.87
Avg Expression:
6.57
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | -8.64198676505678 | 6.84609872264714e-08 |
| 2 | Nipponbare // shoot_apical_meristem // 0_days_after_shift--/--Nipponbare // shoot_apical_meristem // 12_days_after_shift | 2.7623678087091 | 4.5310214862989e-13 |
| 3 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -6.37635651862064 | 0.000499502380977836 |
| 4 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 4.61921784204577 | 9.3242454138864e-10 |
| 5 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | 4.0406426525451 | 0.0356478053897983 |
| 6 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | -9.10894277449966 | 3.64368356789586e-06 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | -2.56623108071952 | 0.0220449971659897 |
| 8 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 4.32049881222663 | 0.000539255714610913 |
| 9 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 3.54281976494365 | 1.67669097079108e-10 |
| 10 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 5.17237747280729 | 0.00120084851992835 |